From e7ef3bef56f3d258df6b244ee3c388f87abbed07 Mon Sep 17 00:00:00 2001
From: RamiKrispin <ramkrisp@umich.edu>
Date: Sat, 18 Mar 2023 08:16:48 +0000
Subject: [PATCH] Auto update coronavirus data

---
 data_pipelines/covid19_cases.html      |  30 ++++++++++++-------------
 data_pipelines/log_main.RData          | Bin 3531 -> 3544 bytes
 data_pipelines/vaccine_data.html       |  18 +++++++--------
 docs/data_pipelines/covid19_cases.html |  30 ++++++++++++-------------
 docs/data_pipelines/vaccine_data.html  |  18 +++++++--------
 5 files changed, 48 insertions(+), 48 deletions(-)

diff --git a/data_pipelines/covid19_cases.html b/data_pipelines/covid19_cases.html
index 3253ee07..4e1f2d5f 100644
--- a/data_pipelines/covid19_cases.html
+++ b/data_pipelines/covid19_cases.html
@@ -301,8 +301,8 @@ <h4 class="tbl-info anchored">Table Info -  conf_df</h4>
 <br>
 Duplicated rows: 0
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+<div class="reactable html-widget html-fill-item-overflow-hidden html-fill-item" id="htmlwidget-3a325c21924695d3fc4b" style="width:auto;height:auto;"></div>
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@@ -337,8 +337,8 @@ <h4 class="tbl-info anchored">Table Info -  death_df</h4>
 <br>
 Duplicated rows: 0
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+<div class="reactable html-widget html-fill-item-overflow-hidden html-fill-item" id="htmlwidget-afabeb3c7bed95dc5b7c" style="width:auto;height:auto;"></div>
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@@ -376,8 +376,8 @@ <h4 class="tbl-info anchored">Table Info -  rec_df</h4>
 <br>
 Duplicated rows: 0
 </div>
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+<div class="reactable html-widget html-fill-item-overflow-hidden html-fill-item" id="htmlwidget-52f5a78431024e33e420" style="width:auto;height:auto;"></div>
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@@ -401,8 +401,8 @@ <h4 class="tbl-info anchored">Table Info -  coronavirus_temp</h4>
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 Duplicated rows: 0
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 Duplicated rows: 0
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@@ -571,19 +571,19 @@ <h3 class="anchored" data-anchor-id="saving-the-data">Saving the data</h3>
 <span id="cb18-3"><a href="#cb18-3" aria-hidden="true" tabindex="-1"></a><span class="fu">tail</span>(log)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
 <pre><code>                   time         dataset  nrows  last_date update success
-394 2023-03-17 01:04:25     coronavirus 973836 2023-03-09  FALSE    TRUE
-395 2023-03-17 01:04:34 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
 396 2023-03-17 08:17:39     coronavirus 973836 2023-03-09  FALSE    TRUE
 397 2023-03-17 08:17:48 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
 398 2023-03-17 16:19:07     coronavirus 973836 2023-03-09  FALSE    TRUE
 399 2023-03-17 16:19:19 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
+400 2023-03-18 01:03:50     coronavirus 973836 2023-03-09  FALSE    TRUE
+401 2023-03-18 01:04:02 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
     backfile branch
-394    FALSE   main
-395    FALSE   main
 396    FALSE   main
 397    FALSE   main
 398    FALSE   main
-399    FALSE   main</code></pre>
+399    FALSE   main
+400    FALSE   main
+401    FALSE   main</code></pre>
 </div>
 <div class="sourceCode cell-code" id="cb20"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb20-1"><a href="#cb20-1" aria-hidden="true" tabindex="-1"></a>log_last <span class="ot">&lt;-</span> log <span class="sc">|&gt;</span> dplyr<span class="sc">::</span><span class="fu">filter</span>(update <span class="sc">==</span> <span class="cn">TRUE</span> <span class="sc">&amp;</span> success <span class="sc">==</span> <span class="cn">TRUE</span>, dataset <span class="sc">==</span> <span class="st">"coronavirus"</span>) <span class="sc">|&gt;</span></span>
 <span id="cb20-2"><a href="#cb20-2" aria-hidden="true" tabindex="-1"></a>  dplyr<span class="sc">::</span><span class="fu">filter</span>(time <span class="sc">==</span> <span class="fu">max</span>(time))</span>
diff --git a/data_pipelines/log_main.RData b/data_pipelines/log_main.RData
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diff --git a/data_pipelines/vaccine_data.html b/data_pipelines/vaccine_data.html
index d190d8b7..ac56c734 100644
--- a/data_pipelines/vaccine_data.html
+++ b/data_pipelines/vaccine_data.html
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@@ -367,8 +367,8 @@ <h4 class="tbl-info anchored">Table Info -  covid19_vaccine</h4>
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@@ -391,19 +391,19 @@ <h3 class="anchored" data-anchor-id="data-validation">Data validation</h3>
 <span id="cb11-13"><a href="#cb11-13" aria-hidden="true" tabindex="-1"></a><span class="fu">tail</span>(log)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
 <pre><code>                   time         dataset  nrows  last_date update success
-395 2023-03-17 01:04:34 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
-396 2023-03-17 08:17:39     coronavirus 973836 2023-03-09  FALSE    TRUE
 397 2023-03-17 08:17:48 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
 398 2023-03-17 16:19:07     coronavirus 973836 2023-03-09  FALSE    TRUE
 399 2023-03-17 16:19:19 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
 400 2023-03-18 01:03:50     coronavirus 973836 2023-03-09  FALSE    TRUE
+401 2023-03-18 01:04:02 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
+402 2023-03-18 08:16:35     coronavirus 973836 2023-03-09  FALSE    TRUE
     backfile branch
-395    FALSE   main
-396    FALSE   main
 397    FALSE   main
 398    FALSE   main
 399    FALSE   main
-400    FALSE   main</code></pre>
+400    FALSE   main
+401    FALSE   main
+402    FALSE   main</code></pre>
 </div>
 <div class="sourceCode cell-code" id="cb13"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb13-1"><a href="#cb13-1" aria-hidden="true" tabindex="-1"></a>log_last <span class="ot">&lt;-</span> log <span class="sc">|&gt;</span> dplyr<span class="sc">::</span><span class="fu">filter</span>(update <span class="sc">==</span> <span class="cn">TRUE</span> <span class="sc">&amp;</span> success <span class="sc">==</span> <span class="cn">TRUE</span>, dataset <span class="sc">==</span> <span class="st">"covid19_vaccine"</span>) <span class="sc">|&gt;</span></span>
 <span id="cb13-2"><a href="#cb13-2" aria-hidden="true" tabindex="-1"></a>  dplyr<span class="sc">::</span><span class="fu">filter</span>(time <span class="sc">==</span> <span class="fu">max</span>(time))</span>
diff --git a/docs/data_pipelines/covid19_cases.html b/docs/data_pipelines/covid19_cases.html
index 3253ee07..4e1f2d5f 100644
--- a/docs/data_pipelines/covid19_cases.html
+++ b/docs/data_pipelines/covid19_cases.html
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 <br>
 Duplicated rows: 0
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@@ -337,8 +337,8 @@ <h4 class="tbl-info anchored">Table Info -  death_df</h4>
 <br>
 Duplicated rows: 0
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@@ -376,8 +376,8 @@ <h4 class="tbl-info anchored">Table Info -  rec_df</h4>
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@@ -571,19 +571,19 @@ <h3 class="anchored" data-anchor-id="saving-the-data">Saving the data</h3>
 <span id="cb18-3"><a href="#cb18-3" aria-hidden="true" tabindex="-1"></a><span class="fu">tail</span>(log)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
 <pre><code>                   time         dataset  nrows  last_date update success
-394 2023-03-17 01:04:25     coronavirus 973836 2023-03-09  FALSE    TRUE
-395 2023-03-17 01:04:34 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
 396 2023-03-17 08:17:39     coronavirus 973836 2023-03-09  FALSE    TRUE
 397 2023-03-17 08:17:48 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
 398 2023-03-17 16:19:07     coronavirus 973836 2023-03-09  FALSE    TRUE
 399 2023-03-17 16:19:19 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
+400 2023-03-18 01:03:50     coronavirus 973836 2023-03-09  FALSE    TRUE
+401 2023-03-18 01:04:02 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
     backfile branch
-394    FALSE   main
-395    FALSE   main
 396    FALSE   main
 397    FALSE   main
 398    FALSE   main
-399    FALSE   main</code></pre>
+399    FALSE   main
+400    FALSE   main
+401    FALSE   main</code></pre>
 </div>
 <div class="sourceCode cell-code" id="cb20"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb20-1"><a href="#cb20-1" aria-hidden="true" tabindex="-1"></a>log_last <span class="ot">&lt;-</span> log <span class="sc">|&gt;</span> dplyr<span class="sc">::</span><span class="fu">filter</span>(update <span class="sc">==</span> <span class="cn">TRUE</span> <span class="sc">&amp;</span> success <span class="sc">==</span> <span class="cn">TRUE</span>, dataset <span class="sc">==</span> <span class="st">"coronavirus"</span>) <span class="sc">|&gt;</span></span>
 <span id="cb20-2"><a href="#cb20-2" aria-hidden="true" tabindex="-1"></a>  dplyr<span class="sc">::</span><span class="fu">filter</span>(time <span class="sc">==</span> <span class="fu">max</span>(time))</span>
diff --git a/docs/data_pipelines/vaccine_data.html b/docs/data_pipelines/vaccine_data.html
index d190d8b7..ac56c734 100644
--- a/docs/data_pipelines/vaccine_data.html
+++ b/docs/data_pipelines/vaccine_data.html
@@ -260,8 +260,8 @@ <h4 class="tbl-info anchored">Table Info -  covid19_vaccine_temp</h4>
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 Duplicated rows: 0
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@@ -367,8 +367,8 @@ <h4 class="tbl-info anchored">Table Info -  covid19_vaccine</h4>
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 Duplicated rows: 0
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@@ -391,19 +391,19 @@ <h3 class="anchored" data-anchor-id="data-validation">Data validation</h3>
 <span id="cb11-13"><a href="#cb11-13" aria-hidden="true" tabindex="-1"></a><span class="fu">tail</span>(log)</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 <div class="cell-output cell-output-stdout">
 <pre><code>                   time         dataset  nrows  last_date update success
-395 2023-03-17 01:04:34 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
-396 2023-03-17 08:17:39     coronavirus 973836 2023-03-09  FALSE    TRUE
 397 2023-03-17 08:17:48 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
 398 2023-03-17 16:19:07     coronavirus 973836 2023-03-09  FALSE    TRUE
 399 2023-03-17 16:19:19 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
 400 2023-03-18 01:03:50     coronavirus 973836 2023-03-09  FALSE    TRUE
+401 2023-03-18 01:04:02 covid19_vaccine 142597 2023-03-09  FALSE    TRUE
+402 2023-03-18 08:16:35     coronavirus 973836 2023-03-09  FALSE    TRUE
     backfile branch
-395    FALSE   main
-396    FALSE   main
 397    FALSE   main
 398    FALSE   main
 399    FALSE   main
-400    FALSE   main</code></pre>
+400    FALSE   main
+401    FALSE   main
+402    FALSE   main</code></pre>
 </div>
 <div class="sourceCode cell-code" id="cb13"><pre class="sourceCode r code-with-copy"><code class="sourceCode r"><span id="cb13-1"><a href="#cb13-1" aria-hidden="true" tabindex="-1"></a>log_last <span class="ot">&lt;-</span> log <span class="sc">|&gt;</span> dplyr<span class="sc">::</span><span class="fu">filter</span>(update <span class="sc">==</span> <span class="cn">TRUE</span> <span class="sc">&amp;</span> success <span class="sc">==</span> <span class="cn">TRUE</span>, dataset <span class="sc">==</span> <span class="st">"covid19_vaccine"</span>) <span class="sc">|&gt;</span></span>
 <span id="cb13-2"><a href="#cb13-2" aria-hidden="true" tabindex="-1"></a>  dplyr<span class="sc">::</span><span class="fu">filter</span>(time <span class="sc">==</span> <span class="fu">max</span>(time))</span>