From 896e7af27285514b0cc96fc1b5174309498dd8ed Mon Sep 17 00:00:00 2001 From: beasleyjonm <85600465+beasleyjonm@users.noreply.github.com> Date: Sat, 23 Nov 2024 21:03:48 -0500 Subject: [PATCH] Convert activity type mapping to log-scale. The activity and potency types on Drug Central are log-scaled, so let's add the "p" in front of the activity types to reflect that. --- parsers/drugcentral/src/loaddrugcentral.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/parsers/drugcentral/src/loaddrugcentral.py b/parsers/drugcentral/src/loaddrugcentral.py index bd828a85..16839b60 100644 --- a/parsers/drugcentral/src/loaddrugcentral.py +++ b/parsers/drugcentral/src/loaddrugcentral.py @@ -269,11 +269,11 @@ def get_bioactivity_predicate(line): 'RELEASING AGENT':'biolink:interacts_with'} act_type_mappings = { - 'IC50':'biolink:decreases_activity_of', - 'Kd':'biolink:interacts_with', - 'AC50':'biolink:increases_activity_of', - 'Ki':'biolink:decreases_activity_of', - 'EC50':'biolink:increases_activity_of' + 'pIC50':'biolink:decreases_activity_of', + 'pKd':'biolink:interacts_with', + 'pAC50':'biolink:increases_activity_of', + 'pKi':'biolink:decreases_activity_of', + 'pEC50':'biolink:increases_activity_of' } """