From a7b53d92776587b297932463b157525c5573cec3 Mon Sep 17 00:00:00 2001 From: Evan Morris Date: Mon, 5 Feb 2024 11:03:06 -0500 Subject: [PATCH] updating histone modification go term (the old one was obsoleted) --- parsers/yeast/src/loadHistoneMap.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/parsers/yeast/src/loadHistoneMap.py b/parsers/yeast/src/loadHistoneMap.py index a3e5135e..d3e3000b 100644 --- a/parsers/yeast/src/loadHistoneMap.py +++ b/parsers/yeast/src/loadHistoneMap.py @@ -202,9 +202,9 @@ def fetch_histone_data(self, 'H4K8ac': None, 'H4R3me': None, 'H4R3me2s': None, 'HTZ1': None} # Will continue to work on this mapping. - # Get descendants of GO term "histone modification" (GO:0016570) + # Get descendants of GO term "histone modifying activity" (GO:0140993) HisModDescendants = rq.get( - f"https://www.ebi.ac.uk/QuickGO/services/ontology/go/terms/{'GO:0016570'}/descendants").json() + f"https://www.ebi.ac.uk/QuickGO/services/ontology/go/terms/GO:0140993/descendants").json() descendants = str(HisModDescendants['results'][0]['descendants']).replace("'", "").replace(" ", "").replace( "[", "").replace("]", "") descendantNames = rq.get(f"https://www.ebi.ac.uk/QuickGO/services/ontology/go/terms/{descendants}").json()