-
Notifications
You must be signed in to change notification settings - Fork 0
/
index - Copy.html
670 lines (618 loc) · 32.1 KB
/
index - Copy.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<!-- The above 3 meta tags *must* come first in the head; any other head content must come *after* these tags -->
<title>KnetMiner</title>
<!-- Bootstrap -->
<link href="css/bootstrap.css" rel="stylesheet">
<link href="style_knetminer.css" rel="stylesheet">
<link href="https://fonts.googleapis.com/css?family=Kanit|Play" rel="stylesheet"> <!-- used font is Play -->
<link rel="shortcut icon" href="images/favicon.ico" >
<meta name="description" content="KnetMiner, with a silent K and standing for Knowledge Network Miner, is a suite of open-source software tools for gene mining and biological knowledge discovery.">
<meta name="Keywords" content="KnetMiner, software, tool, Gene, Genome, QTL, Ondex, GWAS, Plant, Crop, Big Data, Data Mining, Candidate Gene, Ranking, Prioritization, Bioinformatics, Visualization" />
<!-- HTML5 shim and Respond.js for IE8 support of HTML5 elements and media queries -->
<!-- WARNING: Respond.js doesn't work if you view the page via file:// -->
<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
<script src="https://use.fontawesome.com/a90751c39e.js"></script>
<!-- Google Analytics -->
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','https://www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-88753233-1', 'auto');
ga('send', 'pageview');
</script>
</head>
<body>
<nav class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container-fluid">
<!-- mobile display -->
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#bs-example-navbar-collapse-1" aria-expanded="false">
<span class="sr-only">Menue hide/unhide</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a href="http://knetminer.rothamsted.ac.uk/"><img class="logo-top" src="images/logo-regular.png" height="50" alt="Logo"></a>
</div>
<div class="navi collapse navbar-collapse" id="bs-example-navbar-collapse-1">
<ul class="nav navbar-nav" id="top">
<li><a target="_blank" href="https://github.com/Rothamsted/knetminer/releases">What's new?</a></li>
<li><a target="_blank" href="http://knetminer.rothamsted.ac.uk/KnetMiner_Tutorial.pdf">User Guide</a></li>
<li><a href="publications.html">Publications</a></li>
</ul>
</div>
</div>
</nav> <!-- end navbar -->
<div class="carousel">
<!--carousel -->
<div id="my-carousel" class="carousel slide" data-interval="false">
<ol class="carousel-indicators">
<li data-target="#my-carousel" data-slide-to="0" class="active"></li>
<li data-target="#my-carousel" data-slide-to="1"></li>
<li data-target="#my-carousel" data-slide-to="2"></li>
</ol>
<div class="carousel-inner" role="listbox">
<div class="item active">
<img class="slide" src="images/first-pic2.jpg" alt="First Slide">
<div class="carousel-caption">
<h1 class="subtitle">KnetMiner web app and knowledge graphs</h1>
<h2>Making biological discoveries faster and fun</h2>
</div>
</div>
<div class="item">
<img class="slide" src="images/3field.jpg" alt="Second Slide">
<div class="carousel-caption">
<h1 class="subtitle">Telling the stories of complex traits</h1>
<h2>From genotype to phenotype via gene networks</h2>
</div>
</div>
<div class="item">
<img class="slide" src="images/test2.jpg" alt="Third Slide">
<div class="carousel-caption">
<h1 class="subtitle">Connecting data, technology and humans</h1>
<h2>For an ultimate user experience on PC and mobile devices</h2>
</div>
</div>
</div> <!-- End carousel-inner -->
<!-- Glyphicon carousel -->
<a class="left carousel-control" href="#my-carousel" role="button" data-slide="prev">
<span class="glyphicon glyphicon-chevron-left" aria-hidden="true"></span>
</a>
<a class="right carousel-control" href="#my-carousel" role="button" data-slide="next">
<span class="glyphicon glyphicon-chevron-right" aria-hidden="true"></span>
</a>
</div>
</div> <!-- End carousel -->
<!-- Video carousel -->
<div class="slider-container hidden-xs">
<div class="row">
<div class="col-xs-12 col-sm-12 col-md-12">
<div id="Carousel" class="carousel slide" data-interval="false">
<ol class="carousel-indicators">
<li data-target="#Carousel" data-slide-to="0" class="active"></li>
<li data-target="#Carousel" data-slide-to="1"></li>
<li data-target="#Carousel" data-slide-to="2"></li>
</ol>
<!-- Carousel items -->
<div class="carousel-inner">
<div class="item active">
<div class="row">
<div class="col-xs-12 col-sm-4 col-md-4">
<video controls width="300" class="video-geno">
<source src="videos/KnetMiner-About.mp4" type="video/mp4"/>
</video>
<h4 class="text-video"><strong>Introducing KnetMiner</strong></h4>
<p class="text-video">Short clip to introduce the KnetMiner approach</p>
</div>
<div class="col-xs-12 col-sm-4 col-md-4">
<video controls width="300" class="video-geno">
<source src="videos/Wheat-KnetMiner-v2.mp4" type="video/mp4"/>
</video>
<h4 class="text-video"><strong>KnetMiner Overview</strong></h4>
<p class="text-video">KnetMiner user interface and key features</p>
</div>
<div class="col-xs-12 col-sm-4 col-md-4">
<video controls width="300" class="video-geno">
<source src="videos/Video2.mp4" type="video/mp4" />
</video>
<h4 class="text-video"><strong>KnetMiner Network View</strong></h4>
<p class="text-video">Visualising knowledge networks in the interactive KnetMaps.js</p>
</div>
</div><!--.row-->
</div><!--.item-->
<div class="item">
<div class="row">
<div class="col-sm-4 col-md-4">
<video controls width="300" class="video-geno">
<source src="videos/Video3.mp4" type="video/mp4" />
</video>
<h4 class="text-video"><strong>Connecting the dots with KnetMiner</strong></h4>
<p class="text-video">Interrogating GWAS and interaction data to unveil complex traits in Arabidopsis.</p>
</div>
<div class="col-sm-4 col-md-4">
<video controls width="300" class="video-geno">
<source src="videos/GenoMap.mp4" type="video/mp4" />
</video>
<h4 class="text-video"><strong>KnetMiner Map View</strong></h4>
<p class="text-video">Visualising GWAS, QTL, SNP and genes in the interactive Genomaps.js</p>
</div>
<div class="col-xs-12 col-sm-4 col-md-4">
<video controls width="300" class="video-geno">
<source src="videos/KnetMiner-Intro.mp4" type="video/mp4"/>
</video>
<h4 class="text-video"><strong>KnetMiner walkthrough</strong></h4>
<p class="text-video">Using the KnetMiner search interface and exploring networks</p>
</div>
</div><!--.row-->
</div><!--.item-->
<div class="item">
<div class="row">
<div class="col-sm-4 col-md-4">
<img class="video-geno" src="images/new-videos.jpg"/>
<h4 class="text-video"><strong>We are working on more new videos</strong></h4>
</div>
</div><!--.row-->
</div><!--.item-->
</div><!--.carousel-inner-->
<a data-slide="prev" href="#Carousel" class="left carousel-control">‹</a>
<a data-slide="next" href="#Carousel" class="right carousel-control">›</a>
</div><!--.Carousel-->
</div>
</div>
</div><!--.container-->
<!--video carousel for mobile devices-->
<div id="video-carousel" class="carousel hidden-sm hidden-md hidden-lg">
<!--carousel -->
<div class="carousel slide">
<ol class="carousel-indicators">
<li data-target="#video-carousel" data-slide-to="0" class="active"></li>
<li data-target="#video-carousel" data-slide-to="1"></li>
<li data-target="#video-carousel" data-slide-to="2"></li>
<li data-target="#video-carousel" data-slide-to="3"></li>
<li data-target="#video-carousel" data-slide-to="4"></li>
<li data-target="#video-carousel" data-slide-to="5"></li>
</ol>
<div class="carousel-inner" role="listbox">
<div class="item active">
<video controls width="300" class="video-geno">
<source src="videos/KnetMiner-Intro.mp4" type="video/mp4"/>
</video>
<h4 class="text-video"><strong>Introducing KnetMiner with a use case</strong></h4>
<p class="text-video">Demo of the KnetMiner user interface and its capabilities for evidence-based gene discovery.</p>
</div>
<div class="item">
<video controls width="300" class="video-geno">
<source src="videos/GenoMap.mp4" type="video/mp4"/>
</video>
<h4 class="text-video"><strong>New Map View using GenoMaps.js</strong></h4>
<p class="text-video">Visualisation of GWAS, QTL, SNP and KnetMiner genes on an interactive chromosome map.</p>
</div>
<div class="item">
<video controls width="300" class="video-geno">
<source src="videos/Video2.mp4" type="video/mp4" />
</video>
<h4 class="text-video"><strong>New Network View using KnetMaps.js</strong></h4>
<p class="text-video">Visualise and explore the biological knowledge networks produced by KnetMiner.</p>
</div>
<div class="item">
<video controls width="300" class="video-geno">
<source src="videos/Video3.mp4" type="video/mp4" />
</video>
<h4 class="text-video"><strong>Connecting the dots with KnetMiner</strong></h4>
<p class="text-video">Interrogating GWAS and interaction data to unveil complex traits in Arabidopsis.</p>
</div>
<div class="item">
<img class="video-geno" src="images/new-videos.jpg"/>
<h4 class="text-video"><strong>We are working on new videos</strong></h4>
</div>
<div class="item">
<img class="video-geno" src="images/new-videos.jpg"/>
<h4 class="text-video"><strong>We are working on new videos</strong></h4>
</div>
</div> <!-- End carousel-inner -->
<!-- Glyphicon carousel -->
<a class="left carousel-control" href="#video-carousel" role="button" data-slide="prev">
<span class="glyphicon glyphicon-circle-arrow-left" aria-hidden="true"></span>
</a>
<a class="right carousel-control" href="#video-carousel" role="button" data-slide="next">
<span class="glyphicon glyphicon-circle-arrow-right" aria-hidden="true"></span>
</a>
</div>
</div><!-- End carousel -->
<!-- End slider for mobile -->
<!-- beginning of content -->
<div id="content" class="col-xs-12 col-sm-12 col-md-12 col-lg-12 container-fluid">
<div class="col-xs-12 col-sm-12 col-md-8 col-lg-8">
<h4>Examples of public KnetMiner species</h4>
</div>
<div class="col-xs-12 col-sm-7 col-md-7 col-lg-8"> <!-- div images-->
<!-- KetMiner Wheat -->
<div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-4">
<a href="http://knetminer.rothamsted.ac.uk/Triticum_aestivum/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/pic_wheat1.png" width="170" height="170"/>
<div class="mask">
<p>Triticum aestivum</br>
IWGSC RefSeq v1.1</p>
</div>
<span><p>Wheat</p></span>
</div>
</div>
</a>
</div>
<!-- KetMiner Arabidopsis -->
<div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-4">
<a href="http://knetminer.rothamsted.ac.uk/Arabidopsis_thaliana/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/pic_arabidopsis1.png" width="170" height="170"/>
<div class="mask">
<p>Arabidopsis thaliana</br>
TAIR10</p>
</div>
<span><p>Arabidopsis</p></span> <!-- needed to center short names-->
</div>
</div>
</a>
</div>
<!-- KetMiner Rice (IRRI) -->
<div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-4">
<a href="http://knetminer.rothamsted.ac.uk/Oryza_sativa/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/Rice.jpg" width="170" height="170"/>
<div class="mask">
<p>Oryza sativa Japonica</br>
IRGSP-1.0</p>
</div>
<span><p>Rice</p></span> <!-- needed to center short names-->
</div>
</div>
</a>
</div>
<!-- KetMiner Maize -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="http://knetminer.rothamsted.ac.uk/Zea_mays/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/pic_maize.png" width="170" height="170"/>
<div class="mask">
<p>Zea mays</br>
AGPv4</p>
</div>
<span><p>Maize</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner B.oleracea -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="https://qtlnetminerboleracea.appliedbioinformatics.com.au/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/pic_boleracea_new.png" width="170" height="170"/>
<div class="mask">
<p>B.oleracea</br>
Version 3.0.0</p>
</div>
<span><p>B.oleracea</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner Cicer -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="http://qtlnetminercicer.appliedbioinformatics.com.au/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/chickpea.png" width="170" height="170"/>
<div class="mask">
<p>Chickpea</br>
Version 3.0.0</p>
</div>
<span><p>Chickpea</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner Poplar -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="http://knetminer.rothamsted.ac.uk/Populus_trichocarpa/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/pic_poplar1.png" width="170" height="170"/>
<div class="mask">
<p>Populus trichocarpa</br>
Version 3.1</p>
</div>
<span><p>Poplar</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner Solanaceae -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="http://knetminer.rothamsted.ac.uk/Solanaceae/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/sol1.png" width="170" height="170"/>
<div class="mask">
<p>Solanacea</br>
SL2.50</p>
</div>
<span><p>Solanaceae</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner Potato -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="http://knetminer.rothamsted.ac.uk/Solanum_tuberosum/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/pic_potato1.png" width="170" height="170"/>
<div class="mask">
<p>Solanum tuberosum</br>
SolTub_3.0</p>
</div>
<span><p>Potato</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner Barley -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="http://knetminer.rothamsted.ac.uk/Hordeum_vulgare/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/pic_barley1.jpg" width="170" height="170"/>
<div class="mask">
<p>Hordeum vulgare</br>
ASM32608v1</p>
</div>
<span><p>Barley</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner Chicken -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="http://knetminer.rothamsted.ac.uk/Gallus_gallus/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/pic_chicken.png" width="170" height="170"/>
<div class="mask">
<p>Chicken</br>
Version 3.0.1</p>
</div>
<span><p>Chicken</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner Cow -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="http://knetminer.rothamsted.ac.uk/Bos_taurus/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/pic_cow1.png" width="170" height="170"/>
<div class="mask">
<p>Cow</br>
Version 3.0.1</p>
</div>
<span><p>Cow</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner Pig -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="http://knetminer.rothamsted.ac.uk/Sus_scrofa/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/pic_pig1.png" width="170" height="170"/>
<div class="mask">
<p>Pig</br>
Version 3.0.1</p>
</div>
<span><p>Pig</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner Willow -->
<!-- <div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="http://knetminer.rothamsted.ac.uk/Salix_viminalis/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/willow.jpg" width="170" height="170"/>
<div class="mask">
<p>Willow</br>
Version 3.0.1</p>
</div>
<span><p>Willow</p></span>
</div>
</div>
</a>
</div> -->
<!-- KetMiner Human-Disease -->
<div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-4">
<a href="http://knetminer.rothamsted.ac.uk/HumanDisease/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/humanDisease.png" width="170" height="170"/>
<div class="mask">
<p>Human Diseases</br>
GRCh38</p>
</div>
<span><p>Human Diseases</p></span>
</div>
</div>
</a>
</div>
<!-- KetMiner Fusarium -->
<div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-4">
<a href="http://knetminer.rothamsted.ac.uk/Fusarium_graminearum/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/PlantDisease_fusarium.jpg" width="170" height="170"/>
<div class="mask">
<p>Fusarium graminearum</br>
Version RR1.36</p>
</div>
<span><p>F.graminearum</p></span> <!-- needed to center short names-->
</div>
</div>
</a>
</div>
<!-- KetMiner Zymoseptoria -->
<div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-4">
<a href="http://knetminer.rothamsted.ac.uk/Zymoseptoria_tritici/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/PlantDisease.jpg" width="170" height="170"/>
<div class="mask">
<p>Zymoseptoria tritici</br>
Version MG2.36</p>
</div>
<span><p>Z.tritici</p></span> <!-- needed to center short names-->
</div>
</div>
</a>
</div>
<!--<div class="network-images col-xs-4 col-sm-4 col-md-4 col-lg-3">
<a href="https://github.com/KeywanHP/KnetMiner/wiki/Creating-a-novel-knowledge-network-for-KnetMiner/">
<div class="subqtl">
<div class="testpics">
<img class="testpics" src="images/placeholder.jpg" width="170" height="170"/>
<div class="mask">
</div>
</div>
</div>
</a>
</div> -->
</div> <!-- end div images-->
<div class="twitter container-fluid col-xs-12 col-sm-5 col-md-4 col-lg-4">
<a class="twitter-timeline" data-height="500" href="https://twitter.com/KnetMiner">Tweets by KnetMiner</a> <script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script>
</div>
</div> <!-- end div id=content -->
<div class="overleaf col-xs-12 col-sm-12 col-md-12 col-lg-12 container-fluid">
<!-- <h1 style="padding-left:20px;">Description and Features<span style="color:darkorange;opacity: 0.7;">...</span></h1> -->
<div class="row">
<div class="texty col-xs-12 col-sm-6 col-md-6 col-lg-6">
<div class="col-xs-2 col-sm-2 col-md-2 col-lg-2">
<i class="fa fa-share-alt fa-3x" aria-hidden="true"></i>
</div>
<div class="col-xs-10 col-sm-10 col-md-10 col-lg-10">
<h4><strong>About KnetMiner</strong></h4>
<p>KnetMiner, with a silent "K" and standing for Knowledge Network Miner, is a modern web-app that makes gene mining and knowledge discovery faster and fun.
It takes away the pain of navigating through a myriad of biological databases and literature to find links between genes, traits, diseases and many other types of biological information.
</p>
</div>
</div>
<div class="texty col-xs-12 col-sm-6 col-md-6 col-lg-6">
<div class="col-xs-2 col-sm-2 col-md-2 col-lg-2">
<i class="fa fa-connectdevelop fa-3x" aria-hidden="true"></i>
</div>
<div class="col-xs-10 col-sm-10 col-md-10 col-lg-10">
<h4><strong>Building knowledge networks</strong></h4>
<p >KnetMiner knowledge graphs are built using the open-source <a title="Ondex-KnetBuilder" class="links-text" target="_blank" href="https://github.com/Rothamsted/ondex-knet-builder">
Ondex data integration platform</a> and are available in different flavours such as <a class="links-text" title="RDF" target="_blank" href="https://www.w3.org/RDF/">RDF</a> and <a class="links-text" title="Neo4j" target="_blank" href="https://www.neo4j.com">Neo4j</a>.
We are experts in data integration and can efficiently build custom knowledge graphs for you as a service. Please get in touch.
</p>
</div>
</div>
</div>
<div class="row">
<div class="texty col-xs-12 col-sm-6 col-md-6 col-lg-6">
<div class="col-xs-2 col-sm-2 col-md-2 col-lg-2">
<i class="fa fa-search fa-3x" aria-hidden="true"></i>
</div>
<div class="col-xs-10 col-sm-10 col-md-10 col-lg-10">
<h4><strong>Searching knowledge graphs</strong></h4>
<p>KnetMiner performs over 70 graph queries of varying depths to find direct or indirect links between genes and user provided search terms.
It is very fast through an in-house developed graph database and graph-indexing techniques. This enables KnetMiner to have unique features like real-time user feedback while typing search terms and advanced query term suggestions.
</p>
</div>
</div>
<div class="texty col-xs-12 col-sm-6 col-md-6 col-lg-6">
<div class="col-xs-2 col-sm-2 col-md-2 col-lg-2">
<i class="fa fa-plus-square-o fa-3x" aria-hidden="true"></i>
</div>
<div class="col-xs-10 col-sm-10 col-md-10 col-lg-10">
<h4><strong>Deploy your own KnetMiner in the cloud</strong></h4>
<p>KnetMiner can be easily deployed in the AWS Cloud using Docker. KnetMiner is also available as an App in the <a class="links-text" title="Genestack" target="_blank" href="http://www.genestack.com">Genestack</a> platform.
The KnetMiner-Genestack App allows users to integrate their own private data into the knowledge graph. For more information, read our <a class="links-text" title="KnetMiner-Genestack" target="_blank" href="https://www.rothamsted.ac.uk/news/visualising-data-connections-promises-faster-discoveries">press release</a> and request the <a class="links-text" title="KnetMiner-Genestack" target="_blank" href="https://genestack.com/landings/ebook-knetminer-multi-omics-network-mining/">KnetMiner-Genestack eBook</a>.
</p>
</div>
</div>
</div>
<div class="row">
<div class="texty col-xs-12 col-sm-6 col-md-6 col-lg-6">
<div class="col-xs-2 col-sm-2 col-md-2 col-lg-2">
<i class="fa fa-list-alt fa-3x" aria-hidden="true"></i>
</div>
<div class="col-xs-10 col-sm-10 col-md-10 col-lg-10">
<h4><strong>Candidate gene prioritisation</strong></h4>
<p>Our evidence-based Gene Rank algorithm takes into account the specificity, connectivity and distance of each piece of evidence in a gene knowledge graph.
KnetMiner ranks genes and allows users to refine the results using their own domain expertise and assumptions.
</p>
</div>
</div>
<div class="texty col-xs-12 col-sm-6 col-md-6 col-lg-6">
<div class="col-xs-2 col-sm-2 col-md-2 col-lg-2">
<i class="fa fa-users fa-3x" aria-hidden="true"></i>
</div>
<div class="col-xs-10 col-sm-10 col-md-10 col-lg-10">
<h4><strong>Working with us</strong></h4>
<p>Get in touch with <a class="links-text" title="Keywan Hassani-Pak" target="_blank" href="https://www.rothamsted.ac.uk/our-people/keywan-hassani-pak">Keywan Hassani-Pak</a> if you need help, have feature requests or want to contribute to our open-source code.
KnetMiner is used by thousands of users from academia and industry around the world. We can help to build and deploy KnetMiner species for you too.</p>
</div>
</div>
</div>
</div> <!-- end div -->
<div class="contact-footer col-xs-12 col-sm-12 col-md-12 col-lg-12">
<div class="left-footer col-xs-12 col-sm-12 col-md-4 col-lg-4">
<a target="_blank" title="Rothamsted Research" href="http://www.rothamsted.ac.uk/" class="logos"><img src="images/rothamsted_logo.png" width="80" height="80"/></a>
<a target="_blank" title="BBSRC" href="http://www.bbsrc.ac.uk/" class="logos"><img class="bbsrc-logo" src="images/bbsrc_logo.png" width="194" height="78"/></a>
</div>
<div class="contact-footer col-xs-12 col-sm-12 col-md-4 col-lg-4">
<img class="knetminer-logo" src="images/logo-regular.png" alt="Logo" with="201.5" height="66.3">
<p id="text-logo">Supported by BBSRC grants BB/F006039/1, BB/I023860/1, BB/N022874/1</p>
</div>
<div class="right-footer col-xs-12 col-sm-12 col-md-4 col-lg-4">
<a class="contact-button" title="Contact Page" href="contact.html"><h4 class="contact-button"><i class="glyphicon glyphicon-envelope" alt="envelope"></i> Contact and find us</h4></a>
<p>[email protected] </p>
<div class="twitter-buttons">
<a href="https://twitter.com/KnetMiner" class="twitter-follow-button" data-show-count="false">Follow @KnetMiner</a><script async src="//platform.twitter.com/widgets.js" charset="utf-8"></script>
<script>!function(d,s,id){var js,fjs=d.getElementsByTagName(s)[0],p=/^http:/.test(d.location)?'http':'https';if(!d.getElementById(id)){js=d.createElement(s);js.id=id;js.src=p+'://platform.twitter.com/widgets.js';fjs.parentNode.insertBefore(js,fjs);}}(document, 'script', 'twitter-wjs');</script>
</div>
</div>
</div>
<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.12.4/jquery.min.js"></script>
<!-- Include all compiled plugins (below), or include individual files as needed -->
<script src="js/jquery.mobile.custom.js"></script>
<script src="js/bootstrap.js"></script>
<!-- function for swipping the carousel on mobile devices -->
<script>
$(document).ready(function() {
$("#my-carousel, #video-carousel, #Carousel").swiperight(function() {
$(this).carousel('prev');
});
$("#my-carousel, #video-carousel, #Carousel").swipeleft(function() {
$(this).carousel('next');
});
});
</script>
</body>
</html>