diff --git a/server-datasource-ondexlocal/src/main/java/rres/knetminer/datasource/ondexlocal/service/ExportService.java b/server-datasource-ondexlocal/src/main/java/rres/knetminer/datasource/ondexlocal/service/ExportService.java index 1cc769ecb..f511cb55a 100644 --- a/server-datasource-ondexlocal/src/main/java/rres/knetminer/datasource/ondexlocal/service/ExportService.java +++ b/server-datasource-ondexlocal/src/main/java/rres/knetminer/datasource/ondexlocal/service/ExportService.java @@ -263,7 +263,7 @@ public List exportGeneTable ( */ public String exportGenomapXML ( String apiUrl, List genes, Set userGenes, List userQtlStr, - String keyword, int maxGenes, Map scoredCandidates + String keyword, int maxGenes, Map scoredGeneCandidates ) { log.info ( "Genomaps: generating XML..." ); @@ -351,8 +351,8 @@ else if ( id > size / 3 && id <= 2 * size / 3 ) // Add 'score' tag as well. Double score = 0.0; - if ( scoredCandidates != null && scoredCandidates.get ( gene ) != null ) - score = scoredCandidates.get ( gene ); // fetch score + if ( scoredGeneCandidates != null && scoredGeneCandidates.get ( gene ) != null ) + score = scoredGeneCandidates.get ( gene ); // fetch score sb.append ( "" + score + "\n" ); // score sb.append ( "\n" ); diff --git a/server-datasource-ondexlocal/src/main/java/rres/knetminer/datasource/ondexlocal/service/SearchService.java b/server-datasource-ondexlocal/src/main/java/rres/knetminer/datasource/ondexlocal/service/SearchService.java index b641769a3..3eefeb673 100644 --- a/server-datasource-ondexlocal/src/main/java/rres/knetminer/datasource/ondexlocal/service/SearchService.java +++ b/server-datasource-ondexlocal/src/main/java/rres/knetminer/datasource/ondexlocal/service/SearchService.java @@ -476,8 +476,7 @@ public Set searchQTLsForTraitOld ( String keyword ) throws ParseException } /** - * TODO: this is the new version, which uses the new model gene->pheno->Trait, to be - * tested and activated when switching to the new test dataset. + * This is the new version, which uses the new model gene->pheno->Trait. * * TODO: wrap the exception */