From de6dd6d175a9ac40169c61c48859b6c092fda1be Mon Sep 17 00:00:00 2001 From: Lucian Smith Date: Wed, 13 Mar 2024 16:41:00 -0700 Subject: [PATCH] Create new 'DAE Solver' category; put IDA-like things in it. IDA solvers are ODE solvers plus algebraic rules, not steady state solvers. --- kisao.owl | 138 ++++++++++++++++++++++++++++++++++++++++++++++++++---- 1 file changed, 130 insertions(+), 8 deletions(-) diff --git a/kisao.owl b/kisao.owl index 58b196b..9e4c0e3 100644 --- a/kisao.owl +++ b/kisao.owl @@ -544,13 +544,13 @@ dk SBML-SAT SUNDIALS + libRoadRunner http://identifiers.org/biosimulators/bionetgen http://identifiers.org/biosimulators/jsim http://identifiers.org/biosimulators/opencor http://identifiers.org/biosimulators/pysces http://identifiers.org/biosimulators/tellurium http://identifiers.org/biosimulators/vcell - libRoadRunner CVODE citeulike:1832863 http://identifiers.org/doi/10.1145/1089014.1089020 @@ -8720,7 +8720,7 @@ Hierarchical cluster-based partial least squares regression method uses fuzzy C- - + @@ -11588,10 +11588,10 @@ Levenberg first suggested an improvement to the Newton method in order to make i JRK SUNDIALS SciPy + libRoadRunner http://identifiers.org/biosimulators/copasi http://identifiers.org/biosimulators/gillespy2 http://identifiers.org/biosimulators/tellurium - libRoadRunner initial step size Initial time step size. @@ -13568,8 +13568,8 @@ Example system of equations: - 2012-06-01 JRK + 2012-06-01 true modelling and simulation algorithm parameter value A value of a parameter of an algorithm @@ -13613,8 +13613,8 @@ Example system of equations: - 2021-06-01 JRK + 2021-06-01 true iterative root-finding method Iterative method for finding the root of a function (f(x) = 0). @@ -13662,8 +13662,8 @@ This method only involves evaluations of f. This method is suitable for non-stif - 2021-06-04 JRK + 2021-06-04 scaled property @@ -14965,6 +14965,129 @@ This method only involves evaluations of f. This method is suitable for non-stif + + + + + + + + + + + + + + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + + + + 1 + + + + 2024-03-13 + lps + false + DAE Solver + differential algebraic equation solver + A DAE solver is the general category of packages such as IDA-like methods [http://identifiers.org/biomodels.kisao/KISAO_0000432] that solve systems of differential algebraic equations (DAEs). DAEs are a superset of ODEs that may additionally contain algebraic equations or 'fast' reactions. + + + + + differential algebraic equation solver + EXACT + + + + @@ -16457,7 +16580,6 @@ This method only involves evaluations of f. This method is suitable for non-stif - @@ -16558,5 +16680,5 @@ This method only involves evaluations of f. This method is suitable for non-stif - +