Installation problems

[ernohanninen]

Hi!
I tried to install the PseudotimeDE to my conda environment with following command:
conda skeleton cran https://github.com/SONGDONGYUAN1994/PseudotimeDE
but got an "no tags found" error.

According to this thread conda/conda#6674, you should make a release of PseudotimeDE and then tag it. Here you have instructions how to do this https://docs.github.com/en/repositories/releasing-projects-on-github/managing-releases-in-a-repository

Thanks!

[SONGDONGYUAN1994]

Hi,
Thank you for your suggestion! I have published the first release. Please let me know if it works now.

Best,
Dongyuan

[ernohanninen]

Thanks it solved the issue. However I got an error when trying to build the package with this command:
conda build -c bioconda --R=4.1.3 r-pseudotimede

I got this error even though I specified the conda channel:
conda.exceptions.ResolvePackageNotFound:

• r-slingshot
• r-summarizedexperiment
• r-singlecellexperiment
• r-biocstyle
• r-biocparallel

But I think this is more related to conda than PseudotimeDE package.

[SONGDONGYUAN1994]

It seems like all these packages are from Bioconductor. Can you install them manually?

[ernohanninen]

I have all of these packages already installed in my environment. I also created a new environment without those packages, but still get the same error.