diff --git a/tests/test_assets/gene_info/input/ensg_to_uniprot_mapping_good.tsv b/tests/test_assets/gene_info/input/ensg_to_uniprot_mapping_good.tsv index f09fcd7f..468bb9d6 100644 --- a/tests/test_assets/gene_info/input/ensg_to_uniprot_mapping_good.tsv +++ b/tests/test_assets/gene_info/input/ensg_to_uniprot_mapping_good.tsv @@ -17,3 +17,4 @@ Q16850 ENSG00000001630 Q9Y4W2 ENSG00000001497 P13569 ENSG00000001626 Q13275 ENSG00000001617 +Q1TEST ENSG00000001617 diff --git a/tests/test_assets/gene_info/input/uniprot_input_bad_colnames.csv b/tests/test_assets/gene_info/input/uniprot_input_bad_colnames.csv deleted file mode 100644 index 1d87d8b8..00000000 --- a/tests/test_assets/gene_info/input/uniprot_input_bad_colnames.csv +++ /dev/null @@ -1,7 +0,0 @@ -UniProtKB_accession,RESOURCE_IDENTIFIER -TEST1,ENSG00000000001 -TEST2,ENSG00000000002 -TEST3,ENSG00000000003 -TEST4,ENSG00000000004 -TEST41,ENSG00000000004 -TEST42,ENSG00000000004 \ No newline at end of file diff --git a/tests/test_assets/gene_info/input/uniprot_input_good.csv b/tests/test_assets/gene_info/input/uniprot_input_good.csv deleted file mode 100644 index e4c01ab7..00000000 --- a/tests/test_assets/gene_info/input/uniprot_input_good.csv +++ /dev/null @@ -1,7 +0,0 @@ -uniprotkb_accessions,ensembl_gene_id -TEST1,ENSG00000000001 -TEST2,ENSG00000000002 -TEST3,ENSG00000000003 -TEST4,ENSG00000000004 -TEST41,ENSG00000000004 -TEST42,ENSG00000000004 \ No newline at end of file diff --git a/tests/test_assets/gene_info/output/gene_info_good_output_1.json b/tests/test_assets/gene_info/output/gene_info_good_output_1.json index 3db87005..c39db39e 100644 --- a/tests/test_assets/gene_info/output/gene_info_good_output_1.json +++ b/tests/test_assets/gene_info/output/gene_info_good_output_1.json @@ -662,7 +662,8 @@ "ensembl_permalink": "https://jan2024.archive.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000001617" }, "uniprotkb_accessions": [ - "Q13275" + "Q13275", + "Q1TEST" ] }, { diff --git a/tests/test_assets/gene_info/output/gene_info_good_output_2.json b/tests/test_assets/gene_info/output/gene_info_good_output_2.json index d159230c..dc8ad4c0 100644 --- a/tests/test_assets/gene_info/output/gene_info_good_output_2.json +++ b/tests/test_assets/gene_info/output/gene_info_good_output_2.json @@ -635,7 +635,7 @@ "ensembl_possible_replacements": [], "ensembl_permalink": "https://jan2024.archive.ensembl.org/Homo_sapiens/Gene/Summary?db=core;g=ENSG00000001617" }, - "uniprotkb_accessions": ["Q13275"] + "uniprotkb_accessions": ["Q13275", "Q1TEST"] }, { "ensembl_gene_id": "ENSG00000001626", diff --git a/tests/test_assets/gene_info/output/geneinfo_uniprot_output.tsv b/tests/test_assets/gene_info/output/geneinfo_uniprot_output.tsv deleted file mode 100644 index dc32173b..00000000 --- a/tests/test_assets/gene_info/output/geneinfo_uniprot_output.tsv +++ /dev/null @@ -1,6 +0,0 @@ -ensembl_gene_id other_column1 other_column2 uniprotkb_accessions -ENSG00000000001 A B "['TEST1']" -ENSG00000000002 A B "['TEST2']" -ENSG00000000003 A B "['TEST3']" -ENSG00000000004 A B "['TEST4', 'TEST41', 'TEST42']" -ENSG00000000005 A B