From 9fdf0096b081e31dc38004b6a5c3ab5c779c2201 Mon Sep 17 00:00:00 2001 From: Paul Lang <47160416+paulflang@users.noreply.github.com> Date: Wed, 13 Dec 2023 13:02:47 +0100 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 0b22b48..d0b1a48 100644 --- a/README.md +++ b/README.md @@ -11,7 +11,7 @@ SBMLToolkit.jl is a lightweight tool to import models specified in the Systems Biology Markup Language (SBML) into the Julia SciML ecosystem. There are multiple ways to specify the same model in SBML. Please help us improving SBMLToolkit.jl by creating a GitHub issue if you experience errors when converting your SBML model. -SBMLToolkit uses the [SBML.jl](https://github.com/LCSB-BioCore/SBML.jl) wrapper of the [libSBML](https://model.caltech.edu/software/libsbml/) library to lower dynamical SBML models into dynamical systems. If you would like to import BioNetGen models use the `writeSBML()` export function or import the `.net` file with [ReactionNetworkImporters.jl](https://github.com/SciML/ReactionNetworkImporters.jl). For constrained-based modeling, please have a look at [COBREXA.jl](https://github.com/LCSB-BioCore/COBREXA.jl). +SBMLToolkit uses the [SBML.jl](https://github.com/LCSB-BioCore/SBML.jl) wrapper of the [libSBML](https://model.caltech.edu/software/libsbml/) library to lower dynamical SBML models into dynamical systems. If you would like to import BioNetGen models use the `writeSBML()` export function or import the `.net` file with [ReactionNetworkImporters.jl](https://github.com/SciML/ReactionNetworkImporters.jl). For constrained-based modeling, please have a look at [COBREXA.jl](https://github.com/LCSB-BioCore/COBREXA.jl). We also recommend trying [SBMLImporter.jl](https://github.com/sebapersson/SBMLImporter.jl) (Pros: respects directionality of events, outputs concentrations instead of amounts. Cons: imports ODESystems, i.e. does not interface with Catalyst). ## Installation