Cluster level annotation question

[liuyang2006]

Dear author,

Could you provide ways to annotate at per-cluster level, not at per-cell level? Thank you!

Best,
Yang

[ChuanXu1]

@liuyang2006, you can enable majority-voting using your own clusters (i.e., celltypist.annotate(your_data, majority_voting = True, over_clustering = 'your_cluster_column_in_obs')) to annotate each cluster into the dominant cell type.