v0.3.0
- Updated imaging workflow output directory structure.
- Added export of pipeline parameters, metadata items, and additional image outputs.
- Added multiscale feature extraction inspired by SAMPLER work (PMID: 37577691).
- Added experimental option of sub-tiling for use with feature extraction.
- Added slide focus checking.
- Added CTransPath as an extractor of imaging features.
- Added subworkflow for sampling of tiles.
- Optimized HoVer-Net segmentation steps. Added option for GPU-based segmentation.
- Added postprocessing step to visualize outputs.
- Added the AOI (automatic object identification) util for preparing ROI JSON for STQ.
v0.2.0
- This version was referenced in the publication (PMID: 38626768).
- Refactored and optimized codebase.
- Added Xengsort read classification option.
- Added documentation details to improve user experience.
v0.1.0
- Initial release