From 3a6791f4663d855f08ee92f83c7f6dded67005d7 Mon Sep 17 00:00:00 2001 From: hackermd Date: Sun, 2 Jul 2017 18:21:36 +0000 Subject: [PATCH] Fix bug in example script --- examples/upload-and-process-experiment.sh | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/examples/upload-and-process-experiment.sh b/examples/upload-and-process-experiment.sh index 4923395..9fd45a6 100755 --- a/examples/upload-and-process-experiment.sh +++ b/examples/upload-and-process-experiment.sh @@ -186,7 +186,7 @@ for plate_dir in "${datadir}"/plates/*; do fi acquisition_name=$(basename "$plate_name") tm_client acquisition -e "${name}" create -p "$plate_name" -n "$acquisition_name" - tm_client microscope-file -e "${name}" upload -p "$plate_name" -a "$acquisition_name" --directory "$acquisition_dir" + tm_client microscope-file -e "${name}" upload -p "$plate_name" -a "$acquisition_name" --directory "$acquisition_dir/microscope_images" done done @@ -196,7 +196,7 @@ tm_client workflow -e "${name}" upload --file "${datadir}/workflow.yaml" # Upload jterator project description: -tm_client jtproject -e "${$name}" upload --directory "${datadir}/jtproject" +tm_client jtproject -e "${name}" upload --directory "${datadir}/jtproject" # Submit workflow: