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Install Request: Chemshell 23.0.1 with Python (local install) #582
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Build always asks for charm. I tried to compile one of the NAMD with charm codes existent here, in the user's home but it didn't work because charm build was sending errors. In the Build line in the script I did, the --charmm-ff is an option available to install charm but it doesn't work either. This is the error I get:
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Reading
The options come after that, and these may or may not be relevant:
You can view the options for the chosen arch (so we'd want to look at
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The following code successfully installs Chemshell with Python and NAMD 2.14 + Charm++ + GPU. The binary files are generated correctly and the only part that does not work well is the module creation, at the end. The module is created but doesn't work well. It seems environment variables are not correctly set.
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Hi Nicole, Thanks for this! Everything seems to compile correctly without errors. However I’ve been trying to get NAMD to talk with py-chemshell and haven’t had much luck, perhaps I need to update the link which py-chemshell uses at I have also tried running the NAMD binary by moving to
These errors also occur when I run Hopefilly this is a simple fix to update some paths? One way to check if py-chemshell can talk to NAMD is to navigate to the tests folder at
and run:
When I run this is says that the external code (NAMD) is not found. |
The error in the previous install is due to the GPU driver version installed in Myriad. It is too old and not compatible with the version of Chemshell we want to install. I built everything again, without including cuda and no errors but I'm still having issues in the test to check NAMD communication with Chemshell. The error I get is:
Looking at the log, the error says this:
I do not have any idea of what is failing. Here, the script I used to built it without CUDA:
Here the script to test the communication between NAMD and Chemshell:
I would appreciate if someone can take a look! Any help or comment! Many thanks in advance! |
The error obtained with the cuda version is this:
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Application: Chemshell 23.0.1
Link: Installing ChemShell — Py-ChemShell 23.0.0 documentation
Cluster: Myriad (user account)
Description: Chemshell version that uses Python
License: open source
Special versions or variants: Needs to compile it with NAMD 2.14 or superior
Ticket number: IN06730642
This is my script:
The text was updated successfully, but these errors were encountered: