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_pkgdown.yml
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url: http://uupharmacometrics.github.io/xpose4/
template:
bootstrap: 5
#bootswatch: cerulean
#bootswatch: paper
#bootswatch: flatly
bootswatch: simplex
# development:
# mode: auto
reference:
- title: General information and simple examples
contents:
- xpose4-package
- simprazExample
- simpraz.xpdb
- title: Classic interface
desc: Xpose has a text based menu interface to make it simple for the user to invoke the Xpose specific functions. This interface is called Xpose Classic. Given the limitations a text based interface imposes, Xpose Classic is not very flexible but may be useful for quick assessment of a model and for learning to use Xpose.
contents:
- xpose4
- title: Data import and database manipulation
desc: Functions for managing the inporting of data, visualization of that data and manipulating the resulting Xpose database.
contents:
- xpose.data
- data.checkout
- xvardef
- change.xvardef
- change.parm
- change.var.name
- change.xlabel
- has_concept("data functions")
- -starts_with("xpose4-package")
- title: Data visulalization
contents:
- dv.vs.idv
- pred.vs.idv
- ipred.vs.idv
- cov.hist
- cov.qq
- cov.splom
- cov.summary
- cat.dv.vs.idv.sb
- kaplan.plot
- title: Overall goodness of fit assessment
contents:
- dv.preds.vs.idv
- ind.plots
- basic.gof
- addit.gof
- runsum
- title: Structural model diagnostics
contents:
- starts_with("dv.vs.pred")
- starts_with("dv.vs.ipred")
- starts_with("cwres.vs.idv")
- starts_with("wres.vs.idv")
- starts_with("iwres.vs.idv")
- starts_with("cwres.wres.vs")
- starts_with("cwres.vs.pred")
- cwres.vs.cov
- starts_with("wres.vs.pred")
- wres.vs.cov
- title: Residual model diagnostics
contents:
- starts_with("absval.cwres.")
- starts_with("absval.wres.")
- starts_with("absval.iwres.")
- cwres.dist.hist
- wres.dist.hist
- iwres.dist.hist
- cwres.dist.qq
- wres.dist.qq
- iwres.dist.qq
- starts_with("ind.plots.cwres.")
- starts_with("ind.plots.wres.")
- starts_with("ind.plots.cwres.")
- starts_with("autocorr")
- title: Parameter distribution diagnostics
contents:
- parm.hist
- ranpar.hist
- parm.qq
- ranpar.qq
- parm.splom
- ranpar.splom
- parm.vs.parm
- tabulate.parameters
- parm.summary
- title: Model comparison
contents:
- basic.model.comp
- add.model.comp
- starts_with("absval.d")
- starts_with("dOFV")
- title: Covariate model development
contents:
- parm.vs.cov
- ranpar.vs.cov
- subtitle: GAM functions
desc: Functions take an Xpose object and performs a generalized additive model (GAM) stepwise search for influential covariates on a single model parameter.
contents:
- xpose.gam
- has_concept("GAM functions")
- -starts_with("xpose4-package")
- bootgam.print
- xp.distr.mod.size
- xp.inc.cond.stab.cov
- xp.inc.ind.cond.stab.cov
- xp.inc.prob
- xp.inc.prob.comb.2
- xp.inc.stab.cov
- xp.incl.index.cov
- xp.incl.index.cov.comp
- xp.incl.index.cov.ind
- title: VPC and NPC functions
contents:
- xpose.VPC
- xpose.VPC.both
- xpose.VPC.categorical
- npc.coverage
- kaplan.plot
- cat.pc
- read.npc.vpc.results
- read.vpctab
- title: PsN functions
desc: These functions are the interface between Xpose and PsN, i.e. they do not post-process NONMEM output but rather PsN output.
contents:
- has_concept("PsN functions")
- -starts_with("xpose4-package")
- -starts_with("xpose.VPC")
- -starts_with("npc.coverage")
- -starts_with("read.npc.vpc.results")
- -starts_with("read.vpctab")
- bootgam.print
- bootscm.import
- xp.boot.par.est
- xp.boot.par.est.corr
- xp.daic.npar.plot
- xp.distr.mod.size
- xp.dofv.npar.plot
- xp.dofv.plot
- xp.inc.cond.stab.cov
- xp.inc.ind.cond.stab.cov
- xp.inc.prob
- xp.inc.prob.comb.2
- xp.inc.stab.cov
- xp.incl.index.cov
- xp.incl.index.cov.comp
- xp.incl.index.cov.ind
- title: Generic functions
desc: Generic wrapper functions around the lattice functions. These functions can be invoked by the user but require quite detailed instructions to generate the desired output.
contents:
- has_concept("generic functions")
- -starts_with("xpose4-package")
- xpose.multiple.plot.default
- xpose.panel.bw
- xpose.panel.default
- xpose.panel.histogram
- xpose.panel.qq
- xpose.panel.splom
- xpose.plot.bw
- xpose.plot.default
- xpose.plot.histogram
- xpose.plot.qq
- xpose.plot.splom
- title: See also
contents:
- add.grid.table
- create.xpose.plot.classes
- createXposeClasses
- print.xpose.multiple.plot
- reset.graph.par
- xpose.data-class
- xpose.license.citation
- xpose.multiple.plot-class
- xpose.prefs-class
- xpose.string.print
- xpose.logTicks
# navbar:
# structure:
# left:
# - home
# - reference
# right:
# - news
# - github
# components:
# home:
# icon: fas fa-home fa-lg
# href: index.html
# reference:
# text: Reference
# href: reference/index.html
# news:
# text: Changelog
# href: news/index.html
# github:
# icon: fab fa-github fa-lg
# text: Source
# href: https://github.com/UUPharmacometrics/xpose4
authors:
Andrew C. Hooker:
href: https://katalog.uu.se/profile/?id=N4-631