publish.yml

name: Publish site

on:
  push:
    branches:
    - main
  pull_request:
  workflow_dispatch:

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

permissions:
  contents: read

jobs:
  build:
    runs-on: ubuntu-latest
    steps:
    - name: Check out repository
      uses: actions/checkout@v4

    - name: Set up Quarto
      uses: quarto-dev/quarto-actions/setup@v2

    - name: Install R
      uses: r-lib/actions/setup-r@v2
      with:
        r-version: '4.4.0'

    - name: Install R Dependencies
      uses: r-lib/actions/setup-renv@v2
      with:
        cache-version: 1

    - name: Render Quarto Project
      uses: quarto-dev/quarto-actions/render@v2
      with:
        to: html

    - name: List site structure
      run: tree -L 2 docs/

    - name: Fix permissions if needed
      run: |
        chmod -c -R +rX "docs/" | while read line; do
          echo "::warning title=Invalid file permissions automatically fixed::$line"
        done

    - name: Upload artifact
      uses: actions/upload-pages-artifact@v3
      with:
        path: 'docs/'

  deploy:
    name: Deploy docs to GitHub Pages
    if: github.event_name == 'push' && github.ref == 'refs/heads/main'
    needs: build
    # Set permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
    permissions:
      contents: read
      pages: write
      id-token: write

    environment:
      name: github-pages
      url: ${{ steps.deployment.outputs.page_url }}

    runs-on: ubuntu-latest

    steps:
    - name: Setup Pages
      uses: actions/configure-pages@v5

    - name: Deploy to GitHub Pages
      id: deployment
      uses: actions/deploy-pages@v4