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Question about DRAM-v output #386

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deminatanja opened this issue Nov 5, 2024 · 0 comments
Open

Question about DRAM-v output #386

deminatanja opened this issue Nov 5, 2024 · 0 comments

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@deminatanja
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Hi,
I have run DRAM-v on Virsorter2 processed sequences and got amg_summary.tsv. In that output file, AMGs are listed, so to say, in two groups: some have TRUE in the potential_amg column (=gene_id_origin from genome_summary_form), while some don't (=gene_id_origin from amg_database). The latter ones have much less info in other columns as well. I am wondering if all genes listed in this output file are counted as AMGs or only the ones that have TRUE in the potential_amg column? Could you please explain or refer to where to read more about the structure of the output file?
Best,
Tatiana

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