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Hi,
I have run DRAM-v on Virsorter2 processed sequences and got amg_summary.tsv. In that output file, AMGs are listed, so to say, in two groups: some have TRUE in the potential_amg column (=gene_id_origin from genome_summary_form), while some don't (=gene_id_origin from amg_database). The latter ones have much less info in other columns as well. I am wondering if all genes listed in this output file are counted as AMGs or only the ones that have TRUE in the potential_amg column? Could you please explain or refer to where to read more about the structure of the output file?
Best,
Tatiana
The text was updated successfully, but these errors were encountered:
Hi,
I have run DRAM-v on Virsorter2 processed sequences and got amg_summary.tsv. In that output file, AMGs are listed, so to say, in two groups: some have TRUE in the potential_amg column (=gene_id_origin from genome_summary_form), while some don't (=gene_id_origin from amg_database). The latter ones have much less info in other columns as well. I am wondering if all genes listed in this output file are counted as AMGs or only the ones that have TRUE in the potential_amg column? Could you please explain or refer to where to read more about the structure of the output file?
Best,
Tatiana
The text was updated successfully, but these errors were encountered: