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Benchmarking Dataset

Data name File name Downloaded URL Access date
InSilico InSilico.h5ad https://github.com/jsxlei/SCALE Nov 3, 2021
GM12878vsHEK GM12878vsHEK.h5ad https://github.com/jsxlei/SCALE Nov 3, 2021
Breast_Tumor Breast_Tumor.h5ad https://github.com/jsxlei/SCALE Nov 14, 2021
Leukemia Leukemia.h5ad https://github.com/jsxlei/SCALE Nov 14, 2021
GM12878vsHL GM12878vsHL.h5ad https://github.com/jsxlei/SCALE Nov 14, 2021
Forebrain Forebrain.h5ad https://github.com/jsxlei/SCALE Nov 14, 2021
Splenocyte Splenocyte.h5ad https://github.com/jsxlei/SCALE Nov 14, 2021
SOX10 GSE114557_MM057_MM087_Sox10KD_GoodCells_mergedPeaks_correctformat.counts.txt.gz https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114557 May 18, 2018
Blood2K Filter_Peaks.txt https://drive.google.com/drive/folders/173iFxRyt1-NYCQfNwjs0sdRoaBLRuQYv Jun 20, 2020
Blood2K Filter_Cells.txt https://drive.google.com/drive/folders/173iFxRyt1-NYCQfNwjs0sdRoaBLRuQYv Jun 20, 2020
Blood2K Filter_df.txt https://drive.google.com/drive/folders/173iFxRyt1-NYCQfNwjs0sdRoaBLRuQYv Jun 20, 2020
Blood2K ./Example 2_Blood2K dataset/Processed_Data/metadata.txt http://www.zhanglab-amss.org/homepage/software/scAND_Code.rar Jun 20, 2020