diff --git a/.github/workflows/python.yaml b/.github/workflows/python.yaml index 0df68c91..103e8be9 100644 --- a/.github/workflows/python.yaml +++ b/.github/workflows/python.yaml @@ -8,6 +8,8 @@ on: branches: - main +permissions: {} + jobs: lint: name: Run code checks and formatting hooks diff --git a/.github/workflows/release.yaml b/.github/workflows/release.yaml index 8381c8a1..fb3429da 100644 --- a/.github/workflows/release.yaml +++ b/.github/workflows/release.yaml @@ -6,6 +6,8 @@ on: types: - published +permissions: {} + jobs: build: name: Build source distribution and wheel diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 13e10481..8e0bf7a4 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -10,14 +10,14 @@ repos: - id: end-of-file-fixer - id: mixed-line-ending - repo: https://github.com/pre-commit/mirrors-mypy - rev: v1.14.1 + rev: v1.15.0 hooks: # See https://github.com/pre-commit/mirrors-mypy/blob/main/.pre-commit-hooks.yaml - id: mypy types_or: [python, pyi] args: [--ignore-missing-imports, --scripts-are-modules] - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.9.1 + rev: v0.9.9 hooks: - id: ruff args: [--fix, --exit-non-zero-on-fix] @@ -31,12 +31,12 @@ repos: # - id: pydoclint # args: [--check-class-attributes=False] - repo: https://github.com/astral-sh/uv-pre-commit - rev: 0.5.20 + rev: 0.6.3 hooks: - id: uv-lock name: Lock project dependencies - repo: https://github.com/woodruffw/zizmor-pre-commit - rev: v1.0.1 + rev: v1.4.1 hooks: - id: zizmor args: [--min-severity=medium] diff --git a/docs/guides/transactions.md b/docs/guides/transactions.md index 4676e1e7..2cc67e1b 100644 --- a/docs/guides/transactions.md +++ b/docs/guides/transactions.md @@ -20,9 +20,9 @@ from lakefs_spec import LakeFSFileSystem fs = LakeFSFileSystem() with fs.transaction("repo", "main") as tx: - fs.put_file("train-data.txt", f"repo/{tx.branch.id}/train-data.txt") + fs.put_file("train-data.txt", "train-data.txt") tx.commit(message="Add training data") - fs.put_file("test-data.txt", f"repo/{tx.branch.id}/test-data.txt") + fs.put_file("test-data.txt", "test-data.txt") sha = tx.commit(message="Add test data") tx.tag(sha, name="My train-test split") ``` @@ -35,6 +35,13 @@ The full list of supported lakeFS versioning operations (by default, these opera * [`rev_parse`](../reference/lakefs_spec/transaction.md#lakefs_spec.transaction.LakeFSTransaction.rev_parse), for parsing revisions like branch/tag names and SHA fragments into full commit SHAs. * [`tag`](../reference/lakefs_spec/transaction.md#lakefs_spec.transaction.LakeFSTransaction.tag), for creating a tag pointing to a commit. +## Limitations of transactions + +Transactions are scoped to a single repository and branch only, equal to those given to the `fs.transaction()` context manager. +When uploading files in a transaction via `fs.put()` or `fs.put_file()`, you **must** give all remote paths as file names. +If you use a fully qualified URI, leading repository and branch names will be interpreted as subdirectories, which will be created on upload. +No warnings or errors will be thrown, so be sure to double-check your paths in all transaction scopes. + ## Lifecycle of ephemeral transaction branches You can control the lifecycle for a transaction branch with the `delete` argument: @@ -56,7 +63,7 @@ from lakefs_spec import LakeFSFileSystem fs = LakeFSFileSystem() with fs.transaction("repo", "main", delete="onsuccess") as tx: - fs.put_file("my-file.txt", f"repo/{tx.branch.id}/my-file.txt") + fs.put_file("my-file.txt", "my-file.txt") tx.commit(message="Add my-file.txt") raise ValueError("oops!") ``` diff --git a/src/lakefs_spec/spec.py b/src/lakefs_spec/spec.py index 18666c22..2b13c271 100644 --- a/src/lakefs_spec/spec.py +++ b/src/lakefs_spec/spec.py @@ -684,6 +684,9 @@ def put_file( lpath = stringify_path(lpath) rpath = stringify_path(rpath) + if self._intrans: + rpath = self.transaction.make_uri(rpath) + if precheck and Path(lpath).is_file(): remote_checksum = self.checksum(rpath) local_checksum = md5_checksum(lpath, blocksize=self.blocksize) diff --git a/src/lakefs_spec/transaction.py b/src/lakefs_spec/transaction.py index 52fa85dd..78583f3e 100644 --- a/src/lakefs_spec/transaction.py +++ b/src/lakefs_spec/transaction.py @@ -3,6 +3,7 @@ """ import logging +import os import random import string import warnings @@ -145,6 +146,15 @@ def __exit__(self, exc_type, exc_val, exc_tb): if self.delete == "always" or (success and self.delete == "onsuccess"): self._ephemeral_branch.delete() + def make_uri(self, path: str | os.PathLike[str]) -> str: + spath = str(path) + # NB: this fails silently if the input path is already fully qualified. + # However, in general, it's impossible to distinguish between a + # fully qualified path and a normal nested path, so at most, we + # could split off the first segment of the input and check it against existing + # repositories. + return "/".join([self.repository, self.branch.id, spath]) + @property def branch(self): return self._ephemeral_branch diff --git a/tests/test_put_file.py b/tests/test_put_file.py index 9c85ddf3..d16f5400 100644 --- a/tests/test_put_file.py +++ b/tests/test_put_file.py @@ -21,7 +21,7 @@ def test_no_change_postcommit( message = f"Add file {random_file.name}" with fs.transaction(repository, temp_branch) as tx: - fs.put(lpath, f"{repository.id}/{tx.branch.id}/{random_file.name}") + fs.put(lpath, random_file.name) tx.commit(message=message) commits = list(temp_branch.log(max_amount=2)) @@ -31,7 +31,7 @@ def test_no_change_postcommit( # put the same file again, this time the diff is empty with fs.transaction(repository, temp_branch) as tx: - fs.put(lpath, f"{repository.id}/{tx.branch.id}/{random_file.name}", precheck=False) + fs.put(lpath, random_file.name, precheck=False) tx.commit(message=f"Add file {random_file.name}") # check that no other commit has happened. diff --git a/tests/test_transactions.py b/tests/test_transactions.py index 032c61a2..61fb1ebb 100644 --- a/tests/test_transactions.py +++ b/tests/test_transactions.py @@ -17,12 +17,11 @@ def test_transaction_commit( random_file = random_file_factory.make() lpath = str(random_file) - rpath = f"{repository.id}/{temp_branch.id}/{random_file.name}" message = f"Add file {random_file.name}" with fs.transaction(repository, temp_branch) as tx: - fs.put_file(lpath, f"{repository.id}/{tx.branch.id}/{random_file.name}") + fs.put_file(lpath, random_file.name) assert len(tx.files) == 1 # sha is a placeholder for the actual SHA created on transaction completion. sha = tx.commit(message=message) @@ -65,7 +64,7 @@ def test_transaction_merge( tbname = tx.branch.id lpath = str(random_file) # stage a file on the transaction branch... - fs.put_file(lpath, f"{repository.id}/{tx.branch.id}/{random_file.name}") + fs.put_file(lpath, random_file.name) # ... commit it with the above message tx.commit(message=message) # ... and merge it into temp_branch. @@ -90,7 +89,7 @@ def test_transaction_revert( message = f"Add file {random_file.name}" with fs.transaction(repository, temp_branch, automerge=True) as tx: - fs.put_file(lpath, f"{repository.id}/{tx.branch.id}/{random_file.name}") + fs.put_file(lpath, random_file.name) tx.commit(message=message) revert_commit = tx.revert(temp_branch, temp_branch.head) @@ -113,7 +112,7 @@ def test_transaction_failure( try: with fs.transaction(repository, temp_branch) as tx: - fs.put_file(lpath, f"{repository.id}/{tx.branch.id}/{random_file.name}") + fs.put_file(lpath, random_file.name) tx.commit(message=message) raise RuntimeError("something went wrong") except RuntimeError: @@ -159,8 +158,8 @@ def test_warn_uncommitted_changes( lpath = str(random_file) with pytest.warns(match="uncommitted changes.*lost"): - with fs.transaction(repository, temp_branch) as tx: - fs.put_file(lpath, f"{repository.id}/{tx.branch.id}/{random_file.name}") + with fs.transaction(repository, temp_branch): + 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