From 19993fd821fae436b6d8891a923f6e4af2b64da0 Mon Sep 17 00:00:00 2001
From: Brian Corrie <bdcorrie@gmail.com>
Date: Tue, 12 Dec 2023 11:01:04 +1300
Subject: [PATCH] Make adc_query_support attributeconsistent

Make reactivity_measurements consistent with other arrays in Cell

Missing attribute for Receptor and ReceptorReactivity
---
 specs/airr-schema.yaml | 19 ++++++++++++++++++-
 1 file changed, 18 insertions(+), 1 deletion(-)

diff --git a/specs/airr-schema.yaml b/specs/airr-schema.yaml
index 78e3ea5a9..0fe2da5c7 100644
--- a/specs/airr-schema.yaml
+++ b/specs/airr-schema.yaml
@@ -4294,7 +4294,10 @@ Cell:
                 type: string
             example: [id1, id2]
             x-airr:
+                miairr: defined
                 nullable: true
+                adc-query-support: true
+                name: Cell-associated reactivity measurements
         repertoire_id:
             type: string
             description: Identifier to the associated repertoire in study metadata.
@@ -4543,7 +4546,7 @@ Receptor:
             example: [id1, id2]
             x-airr:
                 nullable: true
-
+                adc-query-support: true
 
 ReceptorReactivity:
     type: object
@@ -4578,6 +4581,7 @@ ReceptorReactivity:
             x-airr:
                 format: controlled_vocabulary
                 nullable: false
+                adc-query-support: true
         antigen_type:
             type: string
             enum:
@@ -4590,6 +4594,7 @@ ReceptorReactivity:
             x-airr:
                 format: controlled_vocabulary
                 nullable: false
+                adc-query-support: true
         antigen:
             $ref: '#/Ontology'
             description: >
@@ -4613,6 +4618,7 @@ ReceptorReactivity:
                 label: Plasmodium falciparum NF54
             x-airr:
                 nullable: true
+                adc-query-support: true
                 format: ontology
                 ontology:
                     draft: true
@@ -4624,11 +4630,13 @@ ReceptorReactivity:
             description: Start position of the peptide within the reference protein sequence
             x-airr:
                 nullable: true
+                adc-query-support: true
         peptide_end:
             type: integer
             description: End position of the peptide within the reference protein sequence
             x-airr:
                 nullable: true
+                adc-query-support: true
         peptide_sequence_aa:
             type: string
             description: >
@@ -4649,6 +4657,7 @@ ReceptorReactivity:
             x-airr:
                 format: controlled_vocabulary
                 nullable: true
+                adc-query-support: true
         mhc_gene_1:
             $ref: '#/Ontology'
             description: The MHC gene to which the mhc_allele_1 belongs
@@ -4658,6 +4667,7 @@ ReceptorReactivity:
                 label: HLA-DRA
             x-airr:
                 nullable: true
+                adc-query-support: true
                 format: ontology
                 ontology:
                     draft: true
@@ -4670,6 +4680,7 @@ ReceptorReactivity:
             example: HLA-DRA
             x-airr:
                 nullable: true
+                adc-query-support: true
         mhc_gene_2:
             $ref: '#/Ontology'
             description: The MHC gene to which the mhc_allele_2 belongs
@@ -4679,6 +4690,7 @@ ReceptorReactivity:
                 label: HLA-DRB1
             x-airr:
                 nullable: true
+                adc-query-support: true
                 format: ontology
                 ontology:
                     draft: true
@@ -4692,6 +4704,7 @@ ReceptorReactivity:
             example: HLA-DRB1*04:01
             x-airr:
                 nullable: true
+                adc-query-support: true
         reactivity_method:
             type: string
             enum:
@@ -4705,6 +4718,7 @@ ReceptorReactivity:
             x-airr:
                 format: controlled_vocabulary
                 nullable: false
+                adc-query-support: true
         reactivity_readout:
             type: string
             enum:
@@ -4720,15 +4734,18 @@ ReceptorReactivity:
             x-airr:
                 format: controlled_vocabulary
                 nullable: false
+                adc-query-support: true
         reactivity_value:
             type: number
             description: The absolute (processed) value of the measurement
             example: 162.26
             x-airr:
                 nullable: false
+                adc-query-support: true
         reactivity_unit:
             type: string
             description: The unit of the measurement
             example: pg/ml
             x-airr:
                 nullable: false
+                adc-query-support: true