Class I MODELLER-generated 3D structures
Class I x-ray crystallography structures
Class II MODELLER-generated 3D structures
Class II x-ray crystallography structures
FASTA sequence alignments
GenBank aa sequences w no structure
Mitochondria and Plastids
Partial Order Alignments (POA)
10RandomSamples_SampleNames.xml
10RandomSamples_TraitSet.xml
AARS_shuffledClassIIcolumns.xml
AARS_withGaps_newInitTree_BD_20states.xml
AARS_withGaps_newInitTree_BD_noKMSKS_20states.xml
AARS_withGaps_newInitTree_BD_noKMSKS_ClassINtermClassIICterm.xml
ClassIClassII_betterPriors.log
ClassIClassII_betterPriors.trees
ClassIClassII_betterPriors.xml
ClassIClassII_betterPriors.xml.state
ClassICtermClassIINtermSequences.xml
IterativeSubMatrix_noKMSKS_20states_SEQUENCES.xml
IterativeSubstitutionMatrix_noKMSKS_21states.xml
IterativeSubstitutionMatrix_noKMSKS_21states_ClassINtermClassIICterm_21states.xml
IterativeSubstitutionMatrix_noKMSKS_Arch.xml
IterativeSubstitutionMatrix_noKMSKS_Bact.xml
IterativeSubstitutionMatrix_noKMSKS_Euk.xml
IterativeSubstitutionMatrix_sim1_consensus.tree
IterativeSubstitutionMatrix_withKMSKS_21states.xml
RandomlyThinLeaves_ClassICtermClassIINterm.py
RandomlyThinLeaves_UpdateTaxonSetsAndTree.py
aaRS_XrayCrystalStructuresOnly.xml
aaRS_alignment_noKMSKS_20states.fasta
aaRS_alignment_withKMSKS_20states.fasta
collapseTree_simResults.R
createMonophyleticTaxonSets.py
replaceWithShuffledSequences.py
shuffledClassIIcolumns.xml
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