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Refactor population structure modules with PCA and NJT methods #272

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alimanfoo opened this issue Sep 11, 2024 · 0 comments
Open

Refactor population structure modules with PCA and NJT methods #272

alimanfoo opened this issue Sep 11, 2024 · 0 comments
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@alimanfoo
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The PCA module is hard, and PCAs are just super hard to interpret, lots of people get confused. Genetic distance and neighbour-joining trees are a more intuitive and easier to interpret method.

Propose to:

  • Create a training module on population structure with neighbour-joining trees, to replace the current PCA module in the entry-level training course.
  • Migrate the PCA training to an advanced-level module.
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