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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "clinicadl"
version = "1.6.1"
description = "Framework for the reproducible processing of neuroimaging data with deep learning methods"
license = "MIT"
authors = ["ARAMIS Lab"]
maintainers = ["Clinica developers <[email protected]>"]
readme = "README.md"
homepage = "https://clinicadl.readthedocs.io"
repository = "https://github.com/aramis-lab/clinicadl.git"
documentation = "https://clinicadl.readthedocs.io"
keywords = [
"bids",
"image processing",
"deep learning",
"neuroimaging",
"neuroscience"
]
classifiers = [
"Development Status :: 4 - Beta",
"Environment :: Console",
"Intended Audience :: Developers",
"Intended Audience :: End Users/Desktop",
"Operating System :: OS Independent",
"Topic :: Scientific/Engineering :: Medical Science Apps.",
"Topic :: Scientific/Engineering :: Image Processing"
]
[tool.poetry.dependencies]
python = ">=3.9,<3.13"
torch = "^2.3.0"
torchvision = "*"
tensorboard = "*"
toml = "*"
pandas = "^2"
numpy = "^2"
scikit-learn = "^1"
scikit-image = "^0.24"
joblib = "^1.2.0"
click = "^8"
click-option-group = "^0.5"
pynvml = "*"
torchio = "^0.18.90"
urllib3= "<2.0.0"
nilearn = "^0.9.2"
[tool.poetry.group.dev.dependencies]
pre-commit = "*"
pytest = "*"
pytest-timeout = "*"
pytest-xdist = "*"
pytest-cov = "^3.0.0"
[tool.poetry.group.tracking]
optional = true
[tool.poetry.group.tracking.dependencies]
wandb = "^0.15.4"
mlflow = "^2.0.0"
codecarbon = "^2.3.1"
[tool.poetry.group.docs]
optional = true
[tool.poetry.group.docs.dependencies]
mkdocs = "^1.1"
mkdocs-material = "*"
pymdown-extensions = "*"
[tool.poetry.scripts]
clinicadl = "clinicadl.cmdline:cli"
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.ruff]
target-version = "py38"
line-length = 88
[tool.ruff.lint]
select = [
"E",
"W",
"I",
]
ignore = ["E203", "E501"]
[tool.ruff.lint.isort]
known-first-party = ["clinicadl"]
[tool.ruff.format]
quote-style = "double"
indent-style = "space"
skip-magic-trailing-comma = false
line-ending = "auto"
[tool.codespell]
summary = ''
skip = ".git,LICENSE.txt,*.m,clinicadl/resources/config/train_config.toml"
quiet-level = 3
ignore-words-list = "nd,fwe,commun,fo,te,artic,ressources"