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evaluate.sh
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conda activate minichain_data
echo "Evaluating results for graphs..."
./k8 paftools.js mapeval Results/GraphChainer/CHM13Y_95H_5%_stable.gaf > CHM13Y_95H/GraphChainer_95H.eval
./k8 paftools.js mapeval Results/GraphChainer/CHM13Y_10H_5%_stable.gaf > CHM13Y_10H/GraphChainer_10H.eval
./k8 paftools.js mapeval Results/GraphAligner/CHM13Y_95H_5%_stable.gaf > CHM13Y_95H/GraphAligner_95H.eval
./k8 paftools.js mapeval Results/GraphAligner/CHM13Y_10H_5%_stable.gaf > CHM13Y_10H/GraphAligner_10H.eval
./k8 paftools.js mapeval Results/minigraph/CHM13Y_95H_5%.gaf > CHM13Y_95H/minigraph_95H.eval
./k8 paftools.js mapeval Results/minigraph/CHM13Y_10H_5%.gaf > CHM13Y_10H/minigraph_10H.eval
./k8 paftools.js mapeval Results/minichain/CHM13Y_95H_5%.gaf > CHM13Y_95H/minichain_95H.eval
./k8 paftools.js mapeval Results/minichain/CHM13Y_10H_5%.gaf > CHM13Y_10H/minichain_10H.eval
echo "Evaluating results for linear genome..."
./k8 paftools.js mapeval Results/minigraph/CHM13Y_L_5%.gaf > CHM13Y/minigraph.eval
./k8 paftools.js mapeval Results/minichain/CHM13Y_L_5%.gaf > CHM13Y/minichain.eval
./k8 paftools.js mapeval Results/minimap2/CHM13Y_L_5%.gaf > CHM13Y/minimap2.eval
./k8 paftools.js mapeval Results/GraphChainer/CHM13Y_L_5%_stable.gaf > CHM13Y/GraphChainer.eval
./k8 paftools.js mapeval Results/GraphAligner/CHM13Y_L_5%_stable.gaf > CHM13Y/GraphAligner.eval
cd CHM13Y_95H
gnuplot roc.gp
convert -density 1200 95H.eps -resize 1920x1080 95H.jpg
cd ..
cd CHM13Y_10H
gnuplot roc.gp
convert -density 1200 10H.eps -resize 1920x1080 10H.jpg
cd ..
cd CHM13Y
gnuplot roc.gp
convert -density 1200 Linear.eps -resize 1920x1080 Linear.jpg
cd ..