- Update report and preimp_qc.py sections to cater for different data types e.g. case-/control-only and case-control data
- Add filter functions for handling trio dataset (mendel erros for IDs+SNPs and HWE p-value for SNPs) and update report and preimp_qc.py sections
- Add support for VCF files and include appropriate filter functions (also check https://blog.hail.is/whole-exome-and-whole-genome-sequencing-recommendations/) -> VCF from arrays differs to that from sequences, so we don't need them here.
- Currently, we're saving intermediate files in /tmp/. Work out a way to store these files temporarily