_quarto.yml

project:
  type: book
  output-dir: docs

book:
  title: "Reproducible Research Bootcamp"
  author: "Aaron R. Williams"
  date: today
  chapters:
    - index.qmd
    - part: Introduction
      chapters:
        - 01_syllabus.qmd
        - 02_embrace-your-fallibility.qmd
    - part: Project Organization
      chapters:
        - 03_project-organization.qmd
    - part: Literate Programming
      chapters:
        - 04_quarto.qmd
        - 05_advanced-quarto.qmd
    - part: Version Control
      chapters:
        - 06_reproducible-research-with-git.qmd
        - 07_advanced-git.qmd
    - part: Programming
      chapters:
        - 08_functions-and-tests.qmd
        - 09_assertive-testing.qmd
    - part: Environment Management
      chapters:
        - 10_renv.qmd
    - part: Putting it All Together
      chapters:
        - 11_culture-and-ethics.qmd
        - 12_final-workflow.qmd
    - references.qmd
  appendices:
    - reproducible-research-bootcamp_software-installation.qmd
    - alternative-software.qmd
      
bibliography: references.bib

format:
  html:
    theme: cosmo
    number-depth: 3