NAMESPACE

# Generated by roxygen2: do not edit by hand

export(deseqresult2DEgenes)
export(deseqresult2tbl)
export(ggplotCounts)
export(goseqTable)
export(idealImmunoTP)
export(plotCoefficients)
export(plot_ma)
export(plot_volcano)
export(read_gmt)
export(sepguesser)
export(sig_heatmap)
export(wrapup_for_iSEE)
import(BiocParallel)
import(DESeq2)
import(GO.db)
import(GenomicRanges)
import(SummarizedExperiment)
import(ggplot2)
import(knitr)
import(methods)
import(pcaExplorer)
import(rmarkdown)
import(shiny)
import(shinydashboard)
import(topGO)
importFrom(AnnotationDbi,keytypes)
importFrom(AnnotationDbi,mapIds)
importFrom(AnnotationDbi,select)
importFrom(DT,datatable)
importFrom(IHW,ihw)
importFrom(IRanges,IRanges)
importFrom(RColorBrewer,brewer.pal)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(UpSetR,fromList)
importFrom(UpSetR,upset)
importFrom(base64enc,dataURI)
importFrom(dplyr,arrange)
importFrom(dplyr,filter)
importFrom(dplyr,inner_join)
importFrom(dplyr,last)
importFrom(dplyr,mutate)
importFrom(dplyr,tbl_df)
importFrom(ggrepel,geom_text_repel)
importFrom(goseq,getgo)
importFrom(goseq,goseq)
importFrom(goseq,nullp)
importFrom(gplots,venn)
importFrom(grDevices,axisTicks)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(heatmaply,heatmaply)
importFrom(limma,goana)
importFrom(limma,topGO)
importFrom(plotly,ggplotly)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(rentrez,entrez_summary)
importFrom(rintrojs,introjs)
importFrom(rintrojs,introjsUI)
importFrom(shiny,addResourcePath)
importFrom(shinyAce,aceAutocomplete)
importFrom(shinyAce,aceEditor)
importFrom(shinyAce,getAceModes)
importFrom(shinyAce,getAceThemes)
importFrom(shinyAce,updateAceEditor)
importFrom(shinyBS,bsCollapse)
importFrom(shinyBS,bsCollapsePanel)
importFrom(shinyBS,bsTooltip)
importFrom(stringr,str_count)
importMethodsFrom(GOstats,hyperGTest)
importMethodsFrom(GOstats,summary)