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Commits on Mar 2, 2021

• Update before GWAS enrichments

  banskt

  committedMar 2, 2021
  877b835

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Commits on May 4, 2020

• All goodies. Pushed together.

  banskt

  committedMay 4, 2020
  d0b24b1

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Commits on Feb 9, 2020

• Sigma_beta optimization and rerun

  banskt

  committedFeb 9, 2020
  e0a3552

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Commits on Nov 15, 2019

• Gencode annotation enrichment

  banskt

  committedNov 15, 2019
  6118451

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Commits on Sep 17, 2019

• CRE enrichment

  banskt

  committedSep 17, 2019
  acad171

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Commits on Aug 29, 2019

• TF enrichment analysis

  banskt

  committedAug 29, 2019
  b55894b

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Commits on Aug 23, 2019

• Added DHS files

  banskt

  committedAug 23, 2019
  036e85b

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Commits on Aug 21, 2019

• Added external files for TF analysis

  banskt

  committedAug 21, 2019
  b6f709e

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• Manhattan Plot Jupyter Notebook

  banskt

  committedAug 21, 2019
  7ee9140

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Commits on Aug 19, 2019

• TEJAAS, GTExv8 on SLURM

  banskt

  committedAug 19, 2019
  fb262a3

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Commits on Aug 18, 2019

• GTEx v8, SLURM, expression preprocessing

  banskt

  committedAug 18, 2019
  2b909a4

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Commits on Aug 15, 2019

• Unstable. backup for tests.

  banskt

  committedAug 15, 2019
  c6d0cb2

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Commits on Apr 30, 2019

• Beware of bugs! I have to work from Potsdam, so pushing early.

  banskt

  committedApr 30, 2019
  6407fd7

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Commits on Mar 27, 2019

• GTEx-like plots

  banskt

  committedMar 27, 2019
  188c3cf

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Commits on Mar 26, 2019

• add gencode filtering to preprocess pipeline

  francosimonetti

  committedMar 26, 2019
  5a528e7

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Commits on Mar 25, 2019

• update data analysis scripts and validation plots

  francosimonetti

  committedMar 25, 2019
  661bbe5

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Commits on Mar 20, 2019

• minor fix and cleanup

  francosimonetti

  committedMar 20, 2019
  c5892e9

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Commits on Mar 19, 2019

• add GTEx gene expression pipeline

  francosimonetti

  committedMar 19, 2019
  8b5c45b

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Commits on Mar 17, 2019

• tissue on tissue heatmap with gtex colors

  francosimonetti

  committedMar 17, 2019
  b5f122d

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Commits on Mar 14, 2019

• add validation plot heatmap, minor pipeline improvements

  francosimonetti

  committedMar 14, 2019
  3b23828

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Commits on Feb 1, 2019

• GNetLMM preprocessing

  banskt

  committedFeb 1, 2019
  ec2fc1b

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Commits on Jan 30, 2019

• Force values to missing genotype for GNetLMM

  banskt

  committedJan 30, 2019
  6adce4e

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• Splitting VCF files, filtering, changing headers

  banskt

  committedJan 30, 2019
  5400486

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Commits on Jan 21, 2019

• Shuffling with supplied donor IDs

  banskt

  committedJan 21, 2019
  cb2ed93

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• removed devtools folder, re-organized analysis, added new plots

  banskt

  committedJan 21, 2019
  4d92c47

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Commits on Jan 7, 2019

• FDR improves results

  banskt

  committedJan 7, 2019
  2e5d774

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Commits on Jan 4, 2019

• Cross-tissue analysis

  banskt

  committedJan 4, 2019
  11106e5

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Commits on Nov 23, 2018

• Submit jobs for MatrixEQTL, TEJAAS (perm and maf null), JPA with normal and shuffled genotype

  banskt

  committedNov 23, 2018
  f3b0043

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Commits on Nov 22, 2018

• Included JPA

  banskt

  committedNov 22, 2018
  1a93cf8

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Commits on Nov 21, 2018

• TEJAAS added to pipeline

  banskt

  committedNov 21, 2018
  08238bf

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Commits on Nov 20, 2018

• Plotted LD maps to find problem in Cardiogenics

  banskt

  committedNov 20, 2018
  dbc27b4

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Commits on Oct 19, 2018

• Looked at results from MatrixEQTL

  banskt

  committedOct 19, 2018
  f81630a

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Commits on Oct 11, 2018

• Let's start the karaoke

  banskt

  committedOct 11, 2018
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