diff --git a/tests/test_commands.py b/tests/test_commands.py index 5c6ed32..c3471d7 100644 --- a/tests/test_commands.py +++ b/tests/test_commands.py @@ -12,8 +12,9 @@ DIANN_TEST_DIR = TEST_DATA_DIR / "diann2mztab" TMT_MZML_FILE = TEST_DATA_DIR / "TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.mzML" -TMT_IDXML_FILE = TEST_DATA_DIR / "TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01.idXML" +TMT_IDXML_FILE = TEST_DATA_DIR / "TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_comet.idXML" TMT_MS_INFO_FILE = TEST_DATA_DIR / "TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_ms_info.parquet" +TMT_STATIC_MS2_INFO_FILE = TEST_DATA_DIR / "STATIC_TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_ms2_info.parquet" TMT_MS2_FILE = TEST_DATA_DIR / "TMT_Erwinia_1uLSike_Top10HCD_isol2_45stepped_60min_01_ms2_info.parquet" @@ -96,7 +97,7 @@ def test_convert_psm(self): """Test converting PSM data""" args = [ "--idxml", str(TMT_IDXML_FILE), - "--ms2_file", str(TMT_MS2_FILE), + "--ms2_file", str(TMT_STATIC_MS2_INFO_FILE), ] result = run_cli_command("psmconvert", args) assert result.exit_code == 0