From 18244b5f2beacef308a1771bfe954da7f0593ce5 Mon Sep 17 00:00:00 2001 From: Matt Massie Date: Tue, 13 May 2014 10:03:44 -0700 Subject: [PATCH] Update CHANGES.md in preparation for 0.10.0 release --- CHANGES.md | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/CHANGES.md b/CHANGES.md index 8ba35ff0f9..2091bf6e4b 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -1,4 +1,21 @@ # ADAM # +* ISSUE [242](https://github.com/bigdatagenomics/adam/pull/242): Upgrade to Parquet 1.4.3 +* ISSUE [241](https://github.com/bigdatagenomics/adam/pull/241): Fixes to FASTA code to properly handle indices. +* ISSUE [239](https://github.com/bigdatagenomics/adam/pull/239): Make ADAMVCFOutputFormat public +* ISSUE [233](https://github.com/bigdatagenomics/adam/pull/233): Build up reference information during cigar processing +* ISSUE [234](https://github.com/bigdatagenomics/adam/pull/234): Predicate to filter conversion +* ISSUE [235](https://github.com/bigdatagenomics/adam/pull/235): Remove unused contiglength field +* ISSUE [232](https://github.com/bigdatagenomics/adam/pull/232): Add `-pretty` and `-o` to the `print` command +* ISSUE [230](https://github.com/bigdatagenomics/adam/pull/230): Remove duplicate mdtag field +* ISSUE [231](https://github.com/bigdatagenomics/adam/pull/231): Helper scripts to run an ADAM Console. +* ISSUE [226](https://github.com/bigdatagenomics/adam/pull/226): Fix ReferenceRegion from ADAMRecord +* ISSUE [225](https://github.com/bigdatagenomics/adam/pull/225): Change Some to Option to check for unmapped reads +* ISSUE [223](https://github.com/bigdatagenomics/adam/pull/223): Use SparkConf object to configure SparkContext +* ISSUE [217](https://github.com/bigdatagenomics/adam/pull/217): Stop using reference IDs and use reference names instead +* ISSUE [220](https://github.com/bigdatagenomics/adam/pull/220): Update SAM to ADAM conversion +* ISSUE [213](https://github.com/bigdatagenomics/adam/pull/213): BQSR updates + +### Version 0.9.0 ### * ISSUE [214](https://github.com/bigdatagenomics/adam/pull/214): Upgrade to Spark 0.9.1 * ISSUE [211](https://github.com/bigdatagenomics/adam/pull/211): FastaConverter Refactor * ISSUE [212](https://github.com/bigdatagenomics/adam/pull/212): Cleanup build warnings