Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

New sodar downloader for Dragen data #226

Closed
Nicolai-vKuegelgen opened this issue Mar 7, 2024 · 0 comments · Fixed by #227
Closed

New sodar downloader for Dragen data #226

Nicolai-vKuegelgen opened this issue Mar 7, 2024 · 0 comments · Fixed by #227

Comments

@Nicolai-vKuegelgen
Copy link
Contributor

Is your feature request related to a problem? Please describe.
The Dragen/Sodar/.../Varfush workflows need specific sets of files from Sodar (including different file types). It would be good to have a specific downloader for this.

Describe the solution you'd like
A function that can download a set files based on specific (remote) file patterns.
Ideally, one that comes with the option/technology to easily built other bulk downloaders.

Describe alternatives you've considered
N/A

Additional context
A new downloader class / function should directly use the new iRODSCommon classes (#208 )

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
1 participant