.clang-format

---
AccessModifierOffset: -4
AlignAfterOpenBracket: Align
AlignArrayOfStructures: Right
AlignConsecutiveAssignments: AcrossComments
AlignConsecutiveBitFields: AcrossComments
AlignConsecutiveMacros: AcrossComments
AlignConsecutiveDeclarations: AcrossComments
AlignEscapedNewlines: Right
AlignOperands:   true
AlignTrailingComments: true
AllowAllArgumentsOnNextLine: false
AllowAllConstructorInitializersOnNextLine: true
AllowAllParametersOfDeclarationOnNextLine: false
AllowShortBlocksOnASingleLine: Never
AllowShortCaseLabelsOnASingleLine: false
AllowShortEnumsOnASingleLine: false
AllowShortFunctionsOnASingleLine: Inline
AllowShortIfStatementsOnASingleLine: Never
AllowShortLambdasOnASingleLine: All
AllowShortLoopsOnASingleLine: false
AlwaysBreakAfterReturnType: None
AlwaysBreakBeforeMultilineStrings: true
AlwaysBreakTemplateDeclarations: Yes
BinPackArguments: false
BinPackParameters: false
BitFieldColonSpacing: Both
BreakBeforeBraces: Custom
BreakBeforeConceptDeclarations: true
BraceWrapping:
  AfterCaseLabel:  true
  AfterClass:      true
  AfterControlStatement: Always
  AfterEnum:       true
  AfterFunction:   true
  AfterNamespace:  true
  AfterObjCDeclaration: true
  AfterStruct:     true
  AfterUnion:      true
  AfterExternBlock: true
  BeforeCatch:     true
  BeforeElse:      true
  BeforeLambdaBody: true
  BeforeWhile:     true
  IndentBraces:    false
  SplitEmptyFunction: false
  SplitEmptyRecord: false
  SplitEmptyNamespace: false
BreakBeforeBinaryOperators: None
BreakBeforeConceptDeclarations: true
BreakBeforeInheritanceComma: true
BreakBeforeTernaryOperators: true
BreakConstructorInitializers: AfterColon
BreakInheritanceList: AfterColon
BreakStringLiterals: true
ColumnLimit:     120
#CommentPragmas:  'REQUIRES'
CommentPragmas:  \/\/!
CompactNamespaces: false
ConstructorInitializerAllOnOneLineOrOnePerLine: true
ConstructorInitializerIndentWidth: 2
ContinuationIndentWidth: 2
Cpp11BracedListStyle: true
DeriveLineEnding: false
DerivePointerAlignment: false
DisableFormat:   false
EmptyLineAfterAccessModifier: Never
EmptyLineBeforeAccessModifier: LogicalBlock
ExperimentalAutoDetectBinPacking: false
FixNamespaceComments: true
ForEachMacros:
  - foreach
  - Q_FOREACH
  - BOOST_FOREACH
IncludeBlocks: Regroup
IncludeCategories:
  - Regex:           '^".*\.hpp"'
    Priority:        20
  - Regex:           '^<bio/io'
    Priority:        10
  - Regex:           '^<bio/'
    Priority:        9
  - Regex:           '^<fmt'
    Priority:        7
  - Regex:           '^<cereal'
    Priority:        6
  - Regex:           '^<seqan3/'
    Priority:        4
  - Regex:           '^<seqan2/'
    Priority:        3
  - Regex:           '^<gtest/'
    Priority:        2
  - Regex:           '.*'
    Priority:        1
IncludeIsMainRegex: '(Test)?$'
IndentAccessModifiers: false
IndentCaseBlocks: true
IndentCaseLabels: true
IndentExternBlock: false
IndentGotoLabels: false
IndentPPDirectives: AfterHash
IndentRequires: true
#IndentRequiresClause: true
IndentWidth:     4
IndentWrappedFunctionNames: false
InsertTrailingCommas: None
KeepEmptyLinesAtTheStartOfBlocks: false
LambdaBodyIndentation: Signature
Language: Cpp
MacroBlockBegin: ''
MacroBlockEnd:   ''
MaxEmptyLinesToKeep: 1
NamespaceIndentation: None
PackConstructorInitializers: NextLine
PenaltyBreakAssignment: 2
PenaltyBreakBeforeFirstCallParameter: 19
PenaltyBreakComment: 300
PenaltyBreakFirstLessLess: 120
PenaltyBreakOpenParenthesis: 50
PenaltyBreakString: 1
PenaltyBreakTemplateDeclaration: 10
PenaltyExcessCharacter: 1000
PenaltyIndentedWhitespace: 0
PenaltyReturnTypeOnItsOwnLine: 200
PointerAlignment: Middle
QualifierAlignment: Custom
QualifierOrder: ['static', 'inline', 'constexpr', 'type', 'const', 'volatile', 'restrict' ]
ReferenceAlignment: Middle
ReflowComments:  false
#RequiresClausePosition: OwnLine
SeparateDefinitionBlocks: Leave
SortIncludes:    CaseInsensitive
SortIncludes: true
SortUsingDeclarations: true
SpaceAfterCStyleCast: false
SpaceAfterLogicalNot: false
SpaceAfterTemplateKeyword: true
SpaceAroundPointerQualifiers: Both
SpaceBeforeAssignmentOperators: true
SpaceBeforeCaseColon: false
SpaceBeforeCpp11BracedList: false
SpaceBeforeCtorInitializerColon: true
SpaceBeforeInheritanceColon: true
SpaceBeforeParens: ControlStatements
SpaceBeforeRangeBasedForLoopColon: true
SpaceBeforeSquareBrackets: false
SpaceInEmptyBlock: false
SpaceInEmptyParentheses: false
SpacesBeforeTrailingComments: 1
SpacesInAngles:  false
SpacesInCStyleCastParentheses: false
SpacesInConditionalStatement: false
SpacesInParentheses: false
SpacesInSquareBrackets: false
Standard: c++20
TabWidth: 4
UseCRLF: false
UseTab: Never