From 8bd8b65618612d9d9286010dedccb611b07d8ca6 Mon Sep 17 00:00:00 2001 From: Nalika Palayoor Date: Thu, 23 Jan 2025 20:13:00 -0500 Subject: [PATCH] Add prefix: dome (#1374) This pull request curates a new prefix 'dome', which is a set of papers related to machine learning related publications. Machine learning has lots of applications in life sciences, which is why I decided it would be relevant to the bioregistry. This PR updates the json and tsv files. This PR is the updated version of #1373 but with correct branching. https://pubmed.ncbi.nlm.nih.gov/39661723/ --------- Co-authored-by: Ben Gyori --- src/bioregistry/data/bioregistry.json | 36 +++++++++++++++++++++++++ src/bioregistry/data/curated_papers.tsv | 1 + 2 files changed, 37 insertions(+) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index 2f2d95e24..857df04bc 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -28681,6 +28681,42 @@ }, "name": "Descriptive Ontology for Linguistic and Cognitive Engineering" }, + "dome": { + "contact": { + "email": "silvio.tosatto@unipd.it", + "github": "silvio-tosatto", + "name": "Silvio Tosatto", + "orcid": "0000-0003-4525-7793" + }, + "contributor": { + "email": "palayoor.n@northeastern.edu", + "github": "nalikapalayoor", + "name": "Nalika Palayoor", + "orcid": "0009-0008-8406-631X" + }, + "description": "The DOME registry is a curated set of papers related to machine learning methods in biology, each with its own unique DOME identifier.", + "example": "dfyn1yvtz3", + "github_request_issue": 1374, + "homepage": "https://registry.dome-ml.org", + "name": "DOME Registry", + "pattern": "^[a-z0-9]{10}$", + "publications": [ + { + "doi": "10.1093/gigascience/giae094", + "pmc": "PMC11633452", + "pubmed": "39661723", + "title": "DOME Registry: implementing community-wide recommendations for reporting supervised machine learning in biology", + "year": 2024 + } + ], + "reviewer": { + "email": "b.gyori@northeastern.edu", + "github": "bgyori", + "name": "Benjamin M. Gyori", + "orcid": "0000-0001-9439-5346" + }, + "uri_format": "https://registry.dome-ml.org/review/$1" + }, "dommino": { "biocontext": { "prefix": "DOMMINO" diff --git a/src/bioregistry/data/curated_papers.tsv b/src/bioregistry/data/curated_papers.tsv index af86222eb..8cd0ab65e 100644 --- a/src/bioregistry/data/curated_papers.tsv +++ b/src/bioregistry/data/curated_papers.tsv @@ -134,6 +134,7 @@ pubmed relevant orcid date_curated relevancy_type pr_added notes 39659497 0 0009-0008-8406-631X 2025-01-07 irrelevant_other 1351 39660292 0 0009-0008-8406-631X 2025-01-07 irrelevant_other 1351 39660842 0 0009-0008-8406-631X 2025-01-17 not_identifiers_resource 1364 +39661723 1 0009-0008-8406-631X 2025-01-21 new_prefix 1374 39670819 0 0009-0008-8406-631X 2025-01-10 irrelevant_other 1351 39672676 0 0009-0008-8406-631X 2025-01-14 irrelevant_other 1364 39684768 0 0009-0008-8406-631X 2025-01-14 irrelevant_other 1364