From abe024c4bdf2f930be89f3eec36eb04f2c28328c Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Sat, 11 Jan 2025 12:27:35 +0200 Subject: [PATCH] Update ICD 11 record (#1352) --------- Co-authored-by: Charles Tapley Hoyt --- exports/alignment/biolink.tsv | 1 - src/bioregistry/data/bioregistry.json | 25 ++++++++++++++++++------- src/bioregistry/data/contexts.json | 1 + 3 files changed, 19 insertions(+), 8 deletions(-) diff --git a/exports/alignment/biolink.tsv b/exports/alignment/biolink.tsv index 9df5b3aa6..39797f71d 100644 --- a/exports/alignment/biolink.tsv +++ b/exports/alignment/biolink.tsv @@ -7,7 +7,6 @@ DOID-PROPERTY http://purl.obolibrary.org/obo/doid#$1 False True gff3 https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md#$1 False False GOP http://purl.obolibrary.org/obo/go#$1 False True gtpo https://rdf.guidetopharmacology.org/ns/gtpo#$1 False False -icd11.foundation http://id.who.int/icd/entity/$1 False False NBO-PROPERTY http://purl.obolibrary.org/obo/nbo#$1 False True NCIT-OBO http://purl.obolibrary.org/obo/ncit#$1 False True PHARMGKB.VARIANT https://www.pharmgkb.org/variant/$1 False False diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index a8cbfd304..893f464e2 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -53796,17 +53796,25 @@ "biolink": { "is_identifiers": false, "is_obo": false, - "prefix": "icd11", + "prefix": "icd11.foundation", "uri_format": "http://id.who.int/icd/entity/$1" }, - "comment": "The codes, such as RA00.0, need their own namespace.", + "comment": "Clinical codes from an ICD-11 linearization (a structured subset of the ICD-11 Foundation tailored for specific use cases, such as morbidity or mortality coding), such as RA00.0, have their own namespace (icd11.code).", "contributor": { "email": "cthoyt@gmail.com", "github": "cthoyt", "name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370" }, - "description": "Diagnostic tool for epidemiology, health management and clinical purposes, maintained by the World Health Organization (WHO). It provides a system of diagnostic codes for classifying diseases, including nuanced classifications of a wide variety of signs, symptoms, abnormal findings, complaints, social circumstances, and external causes of injury or disease.", + "contributor_extras": [ + { + "email": "nicolas.matentzoglu@gmail.com", + "github": "matentzn", + "name": "Nicolas Matentzoglu", + "orcid": "0000-0002-7356-1779" + } + ], + "description": "The ICD-11 Foundation is the comprehensive base layer of the International Classification of Diseases, encompassing all diagnostic concepts, definitions, and semantic relationships, designed for flexibility and adaptability across various use cases, including research, ontology development, and detailed health data analysis.", "example": "402558626", "fairsharing": { "abbreviation": "ICD 11", @@ -53856,13 +53864,13 @@ }, "license": "CC-BY-ND-3.0-IGO", "mappings": { - "biolink": "icd11", + "biolink": "icd11.foundation", "fairsharing": "FAIRsharing.97805c", "hl7": "2.16.840.1.113883.6.347", "integbio": "nbdc02556", "wikidata": "P7807" }, - "name": "International Classification of Diseases, 11th Revision", + "name": "International Classification of Diseases, 11th Revision (Foundation Component)", "providers": [ { "code": "api", @@ -53886,11 +53894,14 @@ "uri_format": "https://icd.who.int/browse/2024-01/mms/en#$1" } ], + "rdf_uri_format": "http://id.who.int/icd/entity/$1", "references": [ "https://icd.who.int/docs/icd-api/license/" ], "synonyms": [ - "ICD-11" + "ICD-11", + "ICD11", + "icd11.foundation" ], "uri_format": "https://icd.who.int/browse11/l-m/en#/http://id.who.int/icd/entity/$1", "wikidata": { @@ -53913,7 +53924,7 @@ "name": "Charles Tapley Hoyt", "orcid": "0000-0003-4423-4370" }, - "description": "ICD11 codes, which typically appear in health records and can be used for post-coordination", + "description": "An ICD-11 code is a standardized alphanumeric identifier used to classify and document diseases, conditions, and health-related issues for global healthcare and statistical purposes.", "example": "NA06.8D", "example_extras": [ "CA71.2", diff --git a/src/bioregistry/data/contexts.json b/src/bioregistry/data/contexts.json index ff417f20f..5f504bf35 100644 --- a/src/bioregistry/data/contexts.json +++ b/src/bioregistry/data/contexts.json @@ -31,6 +31,7 @@ "prefix_remapping": { "ensembl": "ENSEMBL", "icd10": "ICD10WHO", + "icd11": "icd11.foundation", "mesh": "MESH", "omim.ps": "OMIMPS", "orphanet.ordo": "Orphanet",