diff --git a/src/pyobo/api/names.py b/src/pyobo/api/names.py index a2cd003a..18319fd5 100644 --- a/src/pyobo/api/names.py +++ b/src/pyobo/api/names.py @@ -40,8 +40,8 @@ def get_name_by_curie(curie: str, *, version: Optional[str] = None) -> Optional[ X = TypeVar("X") -NO_BUILD_PREFIXES = set() -NO_BUILD_LOGGED = set() +NO_BUILD_PREFIXES: Set[str] = set() +NO_BUILD_LOGGED: Set = set() def _help_get( diff --git a/src/pyobo/sources/rgd.py b/src/pyobo/sources/rgd.py index ef81aba1..d1871257 100644 --- a/src/pyobo/sources/rgd.py +++ b/src/pyobo/sources/rgd.py @@ -28,7 +28,7 @@ # NOTE unigene id was discontinue in January 18th, 2021 dump -GENES_URL = "https://download.rgd.mcw.edu/data_release/GENES.RAT.txt" +GENES_URL = "https://download.rgd.mcw.edu/data_release/GENES_RAT.txt" GENES_HEADER = [ "GENE_RGD_ID", "SYMBOL", diff --git a/src/pyobo/xrefdb/sources/wikidata.py b/src/pyobo/xrefdb/sources/wikidata.py index 93db2a54..12069e92 100644 --- a/src/pyobo/xrefdb/sources/wikidata.py +++ b/src/pyobo/xrefdb/sources/wikidata.py @@ -92,6 +92,7 @@ def _removeprefix(s, prefix): return s[len(prefix) :] return s + HEADERS = { "User-Agent": f"pyobo/{get_version()}", }