From e7fa9484a5a868d8c5a325c5ca438b2383410950 Mon Sep 17 00:00:00 2001 From: Jonathan Karr Date: Tue, 14 Dec 2021 17:32:33 -0500 Subject: [PATCH] refactor: updated documentation links --- Dockerfile | 2 +- README.md | 2 +- biosimulators_cobrapy/_version.py | 2 +- docs-src/tutorial.rst | 4 ++-- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/Dockerfile b/Dockerfile index e32861c..9eba2fc 100644 --- a/Dockerfile +++ b/Dockerfile @@ -14,7 +14,7 @@ # Base OS FROM python:3.9-slim-buster -ARG VERSION="0.1.20" +ARG VERSION="0.1.21" ARG SIMULATOR_VERSION="0.22.1" # metadata diff --git a/README.md b/README.md index 17f2dc5..deb4537 100644 --- a/README.md +++ b/README.md @@ -40,7 +40,7 @@ BioSimulators-COBRApy recognizes the following targets for simulation prediction - Minimum reaction flux: `sbml:reaction/@minFlux` - Maximum reaction flux: `sbml:reaction/@maxFlux` -Please see https://biosimulators.org/conventions/simulation-experiments for more information. +Please see [https://docs.biosimulations.org](https://docs.biosimulations.org/concepts/conventions/simulation-experiments/) for more information. ### Local usage ``` diff --git a/biosimulators_cobrapy/_version.py b/biosimulators_cobrapy/_version.py index e160d93..dccb61c 100644 --- a/biosimulators_cobrapy/_version.py +++ b/biosimulators_cobrapy/_version.py @@ -1 +1 @@ -__version__ = '0.1.20' +__version__ = '0.1.21' diff --git a/docs-src/tutorial.rst b/docs-src/tutorial.rst index c237757..fefc2f6 100644 --- a/docs-src/tutorial.rst +++ b/docs-src/tutorial.rst @@ -7,7 +7,7 @@ BioSimulators-COBRApy is available as a command-line program and as a command-li Creating COMBINE/OMEX archives and encoding simulation experiments into SED-ML ------------------------------------------------------------------------------ -Information about how to create COMBINE/OMEX archives which can be executed by BioSimulators-COBRApy is available at `BioSimulators `_. +Information about how to create COMBINE/OMEX archives which can be executed by BioSimulators-COBRApy is available `here <`https://docs.biosimulations.org/users/creating-projects/>`_. A list of the algorithms and algorithm parameters supported by COBRApy is available at `BioSimulators `_. @@ -29,7 +29,7 @@ BioSimulators-COBRApy recognizes the following targets for simulation prediction * Minimum reaction flux: ``sbml:reaction/@minFlux`` * Maximum reaction flux: ``sbml:reaction/@maxFlux`` -Please see `https://biosimulators.org/conventions/simulation-experiments `_ for more information. +Please see `https://docs.biosimulations.org `_ for more information. Command-line program --------------------