pyproject.toml

# This project configuration should relate only to the high level notebook api (as primary deps).
[tool.poetry]
name = "bio-compose"
version = "0.8.7"
description = "Create, execute, and introspect reproducible composite simulations of dynamic biological systems."
authors = ["Alex Patrie <alexanderpatrie@gmail.com>"]
readme = "README.md"
packages = [{include = "bio_compose"}, {include = "tests"}]
include = ["pyproject.toml"]


[tool.poetry.scripts]
verify = "bio_compose.__main__:verification_cli"
run-simulation = "bio_compose.__main__:simulation_run_cli"


[tool.poetry.dependencies]
python = "^3.10"
requests-toolbelt = "^1.0.0"
seaborn = "^0.13.2"
antimony = "*"
toml = "^0.10.2"
process-bigraph = "^0.0.21"
requests = "^2.32.3"


[tool.poetry.group.docs.dependencies]
sphinx = "^8.1.3"
sphinx-autodoc-typehints = "^2.5.0"
sphinx-rtd-theme = "^3.0.2"


[tool.poetry.group.notebook.dependencies]
ipykernel = "^6.29.5"
jupyterlab = "^4.3.4"


[tool.pytest.ini_options]
testpaths = ["tests"]
addopts = "--ignore=setup.py"
python_files = "main.py"


[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"