From df662c9fff0846424baf432b785aef900ca24f46 Mon Sep 17 00:00:00 2001
From: alexPatrie <alexanderpatrie@gmail.com>
Date: Fri, 1 Mar 2024 12:43:12 -0500
Subject: [PATCH] fixed builder in demo

---
 .../biosimulator_builder.py                   |  2 +-
 notebooks/builder_composer.ipynb              | 29 ++++---------------
 2 files changed, 6 insertions(+), 25 deletions(-)

diff --git a/biosimulator_processes/biosimulator_builder.py b/biosimulator_processes/biosimulator_builder.py
index 682d52d1d..a725240fd 100644
--- a/biosimulator_processes/biosimulator_builder.py
+++ b/biosimulator_processes/biosimulator_builder.py
@@ -4,6 +4,6 @@
 
 
 class BiosimulatorBuilder(Builder):
-    def __init__(self, schema: Dict, tree: Dict, filepath: str):
+    def __init__(self, schema: Dict = None, tree: Dict = None, filepath: str = None):
         super().__init__(schema=schema, tree=tree, file_path=filepath, core=CORE)
 
diff --git a/notebooks/builder_composer.ipynb b/notebooks/builder_composer.ipynb
index b1836f159..b82c9e5e6 100644
--- a/notebooks/builder_composer.ipynb
+++ b/notebooks/builder_composer.ipynb
@@ -15,7 +15,10 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "from builder import Builder, Process, ProcessTypes"
+    "from builder import Builder, Process\n",
+    "from biosimulator_processes import CORE\n",
+    "from biosimulator_processes.data_model import *\n",
+    "from biosimulator_processes.biosimulator_builder import BiosimulatorBuilder"
    ]
   },
   {
@@ -26,18 +29,6 @@
     "## Initialize the builder"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "23ae6471dca4692b",
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": [
-    "from biosimulator_processes import CORE"
-   ]
-  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -45,19 +36,9 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "b = Builder(core=CORE)"
+    "b = BiosimulatorBuilder()"
    ]
   },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "id": "deceb0daee61b0ce",
-   "metadata": {
-    "collapsed": false
-   },
-   "outputs": [],
-   "source": []
-  },
   {
    "cell_type": "markdown",
    "id": "dd85f98e-c5e3-467b-97ab-1ced7e810a17",