diff --git a/bin/piPipes_install_genomes.sh b/bin/piPipes_install_genomes.sh index 0bba19e..97d0d0b 100644 --- a/bin/piPipes_install_genomes.sh +++ b/bin/piPipes_install_genomes.sh @@ -375,7 +375,7 @@ esac # unzipping the UCSC.RepeatMask.bed.gz shipped with the pipeline # if the piPipes already has this in the github, just unzip it -[ ! -s UCSC.RepeatMask.bed -a -s UCSC.RepeatMask.bed.gz ] && gunzip UCSC.RepeatMask.bed.gz +[ ! -s UCSC.RepeatMask.bed -a -s UCSC.RepeatMask.bed.gz ] && gunzip -f UCSC.RepeatMask.bed.gz # if the piPipes does not have it, download it from UCSC [ ! -s UCSC.RepeatMask.bed -a ! -s UCSC.RepeatMask.bed.gz ] && \ mkdir -p rmsk && \