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testsuite.yml
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name: TestSuite
on: [push, pull_request]
jobs:
get_python_versions:
name: "Determine Python versions"
runs-on: ubuntu-latest
outputs:
min-python: ${{ steps.nep29.outputs.min-python }}
max-python: ${{ steps.nep29.outputs.max-python }}
steps:
- name: "calculate versions according to NEP29"
id: nep29
uses: mstimberg/[email protected]
with:
token: ${{ secrets.GITHUB_TOKEN }}
pre-commit:
name: Run linters with pre-commit
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
persist-credentials: false
- uses: actions/setup-python@v5
with:
python-version: '3.10'
cache: 'pip'
cache-dependency-path: .devcontainer/dev-requirements.txt
- name: Install deps
run: pip3 install -r .devcontainer/dev-requirements.txt
- name: Run pre-commit hooks
run: pre-commit run --all-files --show-diff-on-failure
testing:
needs: [get_python_versions, pre-commit]
name: "Python ${{ matrix.python-version }} on ${{ matrix.os }} (standalone: ${{ matrix.standalone }}, 32bit: ${{ matrix.float_dtype_32 }})"
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ubuntu-22.04, windows-2022, macOS-13, macOS-14]
standalone: [false, true]
float_dtype_32: [false, true]
python-version: ["${{ needs.get_python_versions.outputs.max-python }}"]
include:
- os: ubuntu-22.04
standalone: false
python-version: "${{ needs.get_python_versions.outputs.min-python }}"
float_dtype_32: false
- os: ubuntu-22.04
standalone: true
python-version: "${{ needs.get_python_versions.outputs.min-python }}"
float_dtype_32: false
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout Repository
uses: actions/checkout@v4
with:
fetch-depth: 0
persist-credentials: false
- name: Setup Conda and Python
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
auto-activate-base: false
miniforge-version: latest
activate-environment: 'test_env'
python-version: ${{ matrix.python-version }}
- name: Install Brian2 and dependencies
run: |
conda install --quiet --yes pip gsl
python -m pip install .[test]
- name: Determine Cython cache dir
id: cython-cache
run: |
CACHE_DIR=$(python -c 'import os; from Cython.Utils import get_cython_cache_dir; print(os.path.join(get_cython_cache_dir(), "brian_extensions"))')
echo "Cython cache dir: $CACHE_DIR"
echo "cachedir=$CACHE_DIR" >> "$GITHUB_OUTPUT"
- name: restore Cython cache
uses: actions/cache@v4
if: ${{ ! matrix.standalone }}
with:
key: cython-extensions-${{ matrix.os }}-${{ matrix.python-version }}-32bit-${{ matrix.float_dtype_32 }}
path: ${{ steps.cython-cache.outputs.cachedir }}
- name: Run Tests
run: |
cd $GITHUB_WORKSPACE/.. # move out of the workspace to avoid direct import
python $GITHUB_WORKSPACE/$SCRIPT_NAME
cp coverage.xml $GITHUB_WORKSPACE/
env:
SCRIPT_NAME: dev/continuous-integration/run_test_suite.py
SPHINX_DIR: ${{ github.workspace }}/docs_sphinx
AGENT_OS: ${{runner.os}}
STANDALONE: ${{ matrix.standalone }}
FLOAT_DTYPE_32: ${{ matrix.float_dtype_32 }}
- name: Send coverage to Coveralls (parallel)
if: ${{ startsWith(matrix.os, 'ubuntu-') && matrix.python-version == needs.get_python_versions.outputs.max-python }}
uses: coverallsapp/[email protected]
with:
parallel: true
flag-name: run ${{ join(matrix.*, ' - ') }}
coveralls:
name: Indicate completion to coveralls.io
needs: testing
runs-on: ubuntu-latest
steps:
- name: Close parallel build
uses: coverallsapp/[email protected]
with:
parallel-finished: true
test_doc_build:
needs: get_python_versions
name: Test building the documentation
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- name: Checkout Repository
uses: actions/checkout@v4
with:
fetch-depth: 0
persist-credentials: false
submodules: true
- name: Setup Conda and Python
uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
auto-activate-base: false
miniforge-version: latest
activate-environment: 'test_env'
python-version: "${{ needs.get_python_versions.outputs.max-python }}"
- name: Install dependencies
run: pip install -r rtd-requirements.txt
- name: Install brian2
run: pip install .
- name: Build HTML documentation
run: |
cd docs_sphinx
sphinx-build -b html . ../docs
env:
READTHEDOCS: True