diff --git a/src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java b/src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java index 2b7d5308..4a2a3fec 100644 --- a/src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java +++ b/src/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpression.java @@ -85,7 +85,8 @@ public class DigitalExpression extends DGECommandLineBase { private static final Log log = Log.getInstance(DigitalExpression.class); - + public static final String GENE_COLUMN = "GENE"; + @Argument(shortName = StandardOptionDefinitions.INPUT_SHORT_NAME, doc = "The input SAM or BAM file to analyze.") public File INPUT; @@ -370,7 +371,7 @@ private void writeStats (final String gene, final Map countMap, private void writeHeader(final PrintStream out, final List cellBarcodes) { List header = new ArrayList<>(cellBarcodes.size()+1); - header.add("GENE"); + header.add(GENE_COLUMN); header.addAll(cellBarcodes); String h = StringUtils.join(header, "\t"); out.println(h);