diff --git a/src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java b/src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java index b3107f3d..76afd6b7 100644 --- a/src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java +++ b/src/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCounts.java @@ -118,7 +118,7 @@ public class GatherDigitalAlleleCounts extends GeneFunctionCommandLineBase { @Argument(doc = "At least samples must have genotype scores >= GQ_THRESHOLD for the variant in the VCF to be included in the analysis.") public double FRACTION_SAMPLES_PASSING = 0.5; - @Argument(doc = "A list of chromosomes to omit from the analysis. The default is to omit the sex chromosomes.") + @Argument(doc = "A list of chromosomes to omit from the analysis.") public List IGNORED_CHROMOSOMES = null; @Argument(doc = "Only output heterozygous SNPs for these samples. All samples must be heterozygous for the SNP to be analyzed.")