From 6d67d4e8b1b36036af877b26065dfd9736894a43 Mon Sep 17 00:00:00 2001 From: Chris Norman Date: Mon, 13 May 2024 11:47:17 -0400 Subject: [PATCH] Fix reference path. --- .../hellbender/CRAMIssue8768DetectorIntegrationTest.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/test/java/org/broadinstitute/hellbender/CRAMIssue8768DetectorIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/CRAMIssue8768DetectorIntegrationTest.java index ce6b0586e49..23f3991607c 100644 --- a/src/test/java/org/broadinstitute/hellbender/CRAMIssue8768DetectorIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/CRAMIssue8768DetectorIntegrationTest.java @@ -108,7 +108,7 @@ public void testCramAnalysis( ArgumentsBuilder argBuilder = new ArgumentsBuilder(); argBuilder.addInput(inputPath); argBuilder.addOutput(outTextFile); - argBuilder.addReference(Paths.get(referencePath)); + argBuilder.addReference(referencePath); if (outTSVFile != null) { argBuilder.add(CRAMIssue8768Detector.OUTPUT_TSV__ARG_NAME, outTSVFile.getAbsolutePath()); }