From ca0c47ebb531650c8cd4ebe4b95c392ae70fd0f5 Mon Sep 17 00:00:00 2001 From: gbggrant Date: Fri, 10 May 2024 11:08:03 -0400 Subject: [PATCH 1/2] VS-1371 - Compress the tarball for Extract Pgen Merged --- .dockstore.yml | 1 + scripts/variantstore/wdl/GvsUtils.wdl | 4 ++-- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/.dockstore.yml b/.dockstore.yml index 2c40ec408fb..90fcce6be01 100644 --- a/.dockstore.yml +++ b/.dockstore.yml @@ -436,6 +436,7 @@ workflows: - master - ah_var_store - EchoCallset + - gg_VS-1371_CompressTheTarballEchoCallsetVersion - name: MergePgenHierarchicalWdl subclass: WDL primaryDescriptorPath: /scripts/variantstore/wdl/MergePgenHierarchical.wdl diff --git a/scripts/variantstore/wdl/GvsUtils.wdl b/scripts/variantstore/wdl/GvsUtils.wdl index bfb1b47aff7..f711db28dc3 100644 --- a/scripts/variantstore/wdl/GvsUtils.wdl +++ b/scripts/variantstore/wdl/GvsUtils.wdl @@ -309,7 +309,7 @@ task SplitIntervalsTarred { fi # Tar up the interval file directory - tar -cf interval-files.tar interval-files + tar -czf interval-files.tar.gz interval-files >>> runtime { @@ -322,7 +322,7 @@ task SplitIntervalsTarred { } output { - File interval_files_tar = "interval-files.tar" + File interval_files_tar = "interval-files.tar.gz" Array[String] interval_filenames = read_lines("interval_list_list.txt") File monitoring_log = "monitoring.log" } From 38328f06a02a60be0add9b5f267cc606577b7e57 Mon Sep 17 00:00:00 2001 From: gbggrant Date: Fri, 10 May 2024 11:15:54 -0400 Subject: [PATCH 2/2] Be careful naming the branch in .dockstore.yml --- .dockstore.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.dockstore.yml b/.dockstore.yml index 90fcce6be01..40d903c3de9 100644 --- a/.dockstore.yml +++ b/.dockstore.yml @@ -436,7 +436,7 @@ workflows: - master - ah_var_store - EchoCallset - - gg_VS-1371_CompressTheTarballEchoCallsetVersion + - gg_VS-1371_CompressTheTarballAhVarStoreVersion - name: MergePgenHierarchicalWdl subclass: WDL primaryDescriptorPath: /scripts/variantstore/wdl/MergePgenHierarchical.wdl