Welcome to the new game of...
Does it build?
This is a manual test of installing the main packages (to be spliced) - if this fails, there is no point attempting them in the experiment. Spack MUST build and splice them to get any kind of result. From the below, I've derived the following list of packages we can run/test in GitHub actions. I'm also linking to the runs that were used for the experiment. TODO we need to account for experiments that don't generate logs, e.g, either spack error or cancelled.
- qthreads/numactl (run)
- hdf5/pkgconf (run)
- hdf5/zlib (run)
- raja/blt (run)
- raja/camp (run)
- bolt/argobots (run) only successful for main
- bolt/autoconf (run) only successful for main
- darshan-util/autoconf (run) (we have a few results, some versions failed)
- darshan-util/libtool (run)
- darshan-util/m4 (run)
- darshan-util/zlib (run)
- swig/pcre (run)
- swig/pkgconf(run)
Not e4s, but have tests (and were added)
-
binutils/diffutils (run)
-
binutils/gettext (run)
-
binutils/zlib (run)
-
cget/python (run)
-
biobambam2/autoconf (run)
-
biobambam2/libmaus2 (run)
-
biobambam2/libtool (run)
-
biobambam2/m4 (run)
-
dssp/autoconf (run)
-
dssp/boost (run)
-
dssp/libtool (run)
-
dssp/m4 (run)
-
emacs/libjpeg-turbo (run)
-
emacs/libxml2 (run)
-
emacs/ncurses (run)
-
emacs/pcre (run)
-
emacs/pkgconf (run)
-
emacs/zlib (run)
-
falcon/pacbio-daligner (run)
-
falcon/pacbio-damasker (run)
-
falcon/pacbio-dazz-db (run)
-
falcon/pacbio-dextractor (run)
-
falcon/python (run)
-
formetis/metis (run)
-
gdal/brunsli (run)
-
gdal/expat (run) had a lot of install errors for a dep
-
gdal/geos (run)
-
gdal/json-c (run)
-
gdal/lerc (run)
-
gdal/libgeotiff (run)
-
gdal/libjpeg-turbo (run)
-
gdal/libpng (run)
-
gdal/libtiff (run)
-
gdal/ninja (run)
-
gdal/pkgconf (run)
-
gdal/proj (run)
-
gdal/qhull (run)
-
gdal/sqlite (run)
-
gdal/zlib (run)
-
m4/diffutils (run)
-
m4/libsigsegv (run)
-
genesis/openmpi (run)
-
libxml2/libiconv (run)
-
libxml2/pkgconf (run)
-
libxml2/xz (run)
-
libxml2/zlib (run)
-
mercurial/python (run)
-
meson/ninja (run)
-
meson/python (run)
-
minimap2/python (run)
-
minimap2/zlib (run)
-
openmpi/hwloc (run)
-
openmpi/numactl (run)
-
openmpi/openssh (run)
-
openmpi/perl (run)
-
openmpi/pkgconf (run)
-
openmpi/pmix (run)
-
openmpi/zlib (run)
-
parallel-netcdf/m4 (run)
-
parallel-netcdf/openmpi (run)
-
parallel-netcdf/perl (run)
-
perl/berkeley-db (run)
-
perl/bzip2 (run)
-
perl/gdbm (run)
-
perl/zlib (run)
-
python/bzip2 (run)
-
python/expat (run)
-
python/gdbm (run)
-
python/gettext (run)
-
python/libffi (run)
-
python/ncurses (run)
-
python/openssl (run)
-
python/pkgconf (run)
-
python/readline (run)
-
python/sqlite (run)
-
python/util-linux-uuid (run)
-
python/xz (run)
-
python/zlib (run)
-
tk/libx11 (run)
-
tk/libxft (run)
-
tk/libxscrnsaver (run)
-
tk/tcl (run)
-
uftrace/capstone (run)
-
uftrace/libunwind (run)
-
uftrace/lua-luajit (run)
-
uftrace/ncurses (run)
-
uftrace/pkgconf (run)
-
uftrace/python (run)
-
pinentry/libassuan (run)
-
pinentry/libgpg-error (run)
-
sqlite/readline (run)
-
sqlite/zlib (run)
-
umpire/blt (run)
-
umpire/camp (run)
These were run with a smaller set of dependency versions (to fit in GH-actions):
The following packages were either attempted or decided to not be used:
- legion/zlib (run) is Python and doesn't have any libs/binaries that are ELF.
- superlu/openblas (run)
- bolt/automake (run) automake won't work, something about the container
- darshan-util/automake (run) we can't iterate over automake, error that aclocal file missing (cannot reproduce locally).
- cmake/ncurses (run)
- cmake/openssl (run) these timed out.
- genesis/openblas (run)
- uftrace/elfutils (run) spack bug
openblas / cmake generally failed to build (and was not included).
warpx always errored
A checkbox means we have run -> artifacts -> results. Here are additional libraries with tests we can use:
Testing install of additional packages:
- alps: failed
- busco: failed
- callflow: failed
- cpmd: manual download required
- darshan-runtime: failed
- eigenexa: failed
- gatetools: needs llvm, too much for gh-actions
- hdf: failed
- ibm-databroker: failed
- kitty: failed
- magma: killed
- mpich: yaksa too big
- mxnet: too long to build
- n2p2: failed
- omega-h: requires trillinos, nope
- nrm: failed
- openrasmol: failed
- phylice: boost somewhere...
- povray: boost somewhere...
- timemory: has submodules that failed
- tix: fail
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice zfp --runner spack --replace zfp --experiment strumpack --outfile /results/strumpack/3.1.1/zfp/experiment.json
==> Error: OSError: No such file or directory: '/tmp/root/spack-stage/spack-stage-strumpack-3.1.1-x4jojz2yzdhqsnq6lderc4vf72g5nch4/spack-src/examples/data'
/spack/lib/spack/spack/package_base.py:1929, in cache_extra_test_sources:
1926 if os.path.isdir(src_path):
1927 fsys.install_tree(src_path, dest_path)
1928 else:
>> 1929 fsys.mkdirp(os.path.dirname(dest_path))
1930 fsys.copy(src_path, dest_path)docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice papi --runner spack --replace papi@master --experiment hpctoolkit --outfile /results/hpctoolkit/2019.12.28/papi/experiment.json
==> [2022-07-28-18:39:32.583412, 259915] No patches needed for gotcha
==> [2022-07-28-18:39:32.583512, 259915] 259915: gotcha: Building gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb [CMakePackage]
==> [2022-07-28-18:39:32.583806, 259915] write locking [5967684752025944315:1]: timeout 60 sec
==> [2022-07-28-18:39:32.583922, 259915] WRITE LOCK (spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb): /tmp/root/spack-stage/.lock[5967684752025944315:1] [Acquired at 18:39:32.583892]
==> [2022-07-28-18:39:32.597318, 259915] 259915: gotcha: Executing phase: 'cmake'
==> [2022-07-28-18:39:32.988257, 259915] 259915: gotcha: Executing phase: 'build'
==> [2022-07-28-18:39:33.580564, 259915] WRITE LOCK (spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb): /tmp/root/spack-stage/.lock[5967684752025944315:1] [Released at 18:39:33.580527]
==> [2022-07-28-18:39:33.601867, 1] Error: ProcessError: Command exited with status 2:
'make' '-j8'
9 errors found in build log:
124 cd /tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb/spac
k-build-mwysjpl && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/cmake-3.23.2-p
mpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/root/s
pack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb/spack-src /tmp/roo
t/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb/spack-src/src/e
xample/autotee /tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlq
utbeevb/spack-build-mwysjpl /tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap
5sdwqj5qflhlqutbeevb/spack-build-mwysjpl/src/example/autotee /tmp/root/spack-stage/spac
k-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb/spack-build-mwysjpl/src/example/a
utotee/CMakeFiles/autotee_test.dir/DependInfo.cmake --color=
125 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap
5sdwqj5qflhlqutbeevb/spack-build-mwysjpl'
126 make -f src/example/autotee/CMakeFiles/autotee_test.dir/build.make src/example/autotee
/CMakeFiles/autotee_test.dir/build
127 make[2]: Entering directory '/tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7aha
p5sdwqj5qflhlqutbeevb/spack-build-mwysjpl'
128 [ 94%] Building C object src/example/autotee/CMakeFiles/autotee_test.dir/test_autotee.c
.o
129 cd /tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb/spac
k-build-mwysjpl/src/example/autotee && /spack/lib/spack/env/gcc/gcc -I/tmp/root/spack-
stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb/spack-src/include -I/tm
p/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb/spack-src/
src -O2 -g -DNDEBUG -MD -MT src/example/autotee/CMakeFiles/autotee_test.dir/test_autote
e.c.o -MF CMakeFiles/autotee_test.dir/test_autotee.c.o.d -o CMakeFiles/autotee_test.dir
/test_autotee.c.o -c /tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5
qflhlqutbeevb/spack-src/src/example/autotee/test_autotee.c
>> 130 /usr/bin/ld: ../../libgotcha.so.2.0.2: undefined reference to `_dl_sym'
>> 131 collect2: error: ld returned 1 exit status
>> 132 make[2]: *** [src/example/minimal/CMakeFiles/symb_look.dir/build.make:102: src/example/
minimal/symb_look] Error 1
133 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap
5sdwqj5qflhlqutbeevb/spack-build-mwysjpl'
>> 134 make[1]: *** [CMakeFiles/Makefile2:279: src/example/minimal/CMakeFiles/symb_look.dir/al
l] Error 2
135 make[1]: *** Waiting for unfinished jobs....
136 [100%] Linking C executable autotee_test
137 cd /tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb/spac
k-build-mwysjpl/src/example/autotee && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-1
1.2.0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMak
eFiles/autotee_test.dir/link.txt --verbose=1
138 /spack/lib/spack/env/gcc/gcc -O2 -g -DNDEBUG -rdynamic CMakeFiles/autotee_test.dir/test
_autotee.c.o -o autotee_test -Wl,-rpath,/tmp/root/spack-stage/spack-stage-gotcha-1.0.3
-mwysjpl7ahap5sdwqj5qflhlqutbeevb/spack-build-mwysjpl/src/example/autotee:/tmp/root/spa
ck-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap5sdwqj5qflhlqutbeevb/spack-build-mwysjpl/
src libautotee.so ../../libgotcha.so.2.0.2
>> 139 /usr/bin/ld: ../../libgotcha.so.2.0.2: undefined reference to `_dl_sym'
>> 140 collect2: error: ld returned 1 exit status
>> 141 make[2]: *** [src/example/autotee/CMakeFiles/autotee_test.dir/build.make:102: src/examp
le/autotee/autotee_test] Error 1
142 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap
5sdwqj5qflhlqutbeevb/spack-build-mwysjpl'
>> 143 make[1]: *** [CMakeFiles/Makefile2:226: src/example/autotee/CMakeFiles/autotee_test.dir
/all] Error 2
144 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-gotcha-1.0.3-mwysjpl7ahap
5sdwqj5qflhlqutbeevb/spack-build-mwysjpl'
>> 145 make: *** [Makefile:139: all] Error 2docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice [email protected] --runner spack --replace python --experiment py-warpx --outfile /results/py-warpx/21.04/python/experiment.json
'/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/python-3.9.13-a7owmregm4a2ef43uk4x6eyjngeqymej/bin/python3.9' '-m' 'pip' '-vvv' '--no-input' '--no-cache-dir' '--disable-pip-version-check' 'install' '--no-deps' '--ignore-installed' '--no-build-isolation' '--no-warn-script-location' '--no-index' '--prefix=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/py-scipy-1.8.1-3ikxtmm2pwmdbqn4gdsb2463c2lwlpaa' '.'
2 errors found in build log:
11 Created temporary directory: /tmp/pip-install-whsazj3m
12 Processing /tmp/root/spack-stage/spack-stage-py-scipy-1.8.1-3ikxtmm2pwmdbqn4gdsb2463c2lw
lpaa/spack-src
13 Added file:///tmp/root/spack-stage/spack-stage-py-scipy-1.8.1-3ikxtmm2pwmdbqn4gdsb2463
c2lwlpaa/spack-src to build tracker '/tmp/pip-build-tracker-5cpxj4mi'
14 Created temporary directory: /tmp/pip-modern-metadata-as5z10nq
15 Preparing metadata (pyproject.toml): started
16 Running command Preparing metadata (pyproject.toml)
>> 17 setup.py:486: UserWarning: Unrecognized setuptools command ('dist_info --egg-base /tmp/p
ip-modern-metadata-as5z10nq'), proceeding with generating Cython sources and expanding t
emplates
18 warnings.warn("Unrecognized setuptools command ('{}'), proceeding with "
19 Error: 'numpy' must be installed before running the build.
20
21 error: subprocess-exited-with-error
22
23 × Preparing metadata (pyproject.toml) did not run successfully.
...
25 ╰─> See above for output.
26
27 note: This error originates from a subprocess, and is likely not a problem with pip.
28 full command: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/python-3.9.13-a7ow
mregm4a2ef43uk4x6eyjngeqymej/bin/python3.9 /spack/opt/spack/linux-ubuntu22.04-skylake/gc
c-11.2.0/py-pip-22.1.2-gerucbbxb4idfmxo4ytzhuoylqdodiyp/lib/python3.9/site-packages/pip/
_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /tmp/tmpys1dje
eh
29 cwd: /tmp/root/spack-stage/spack-stage-py-scipy-1.8.1-3ikxtmm2pwmdbqn4gdsb2463c2lwlpaa
/spack-src
30 Preparing metadata (pyproject.toml): finished with status 'error'
>> 31 error: metadata-generation-failed
32
33 × Encountered error while generating package metadata.
34 ╰─> See above for output.
35
36 note: This is an issue with the package mentioned above, not pip.
37 hint: See above for details.docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi --experiment papyrus --outfile /results/papyrus/1.0.0/openmpi/experiment.json
==> openmpi: Executing phase: 'autoreconf'
==> openmpi: Executing phase: 'configure'
==> Error: ProcessError: Command exited with status 1:
'/tmp/root/spack-stage/spack-stage-openmpi-main-ccf6ioemc73y22b4r4ney7qmpyn2b34i/spack-src/configure' '--prefix=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-main-ccf6ioemc73y22b4r4ney7qmpyn2b34i' '--enable-shared' '--disable-silent-rules' '--disable-builtin-atomics' '--enable-static' '--enable-mpi1-compatibility' '--without-psm2' '--without-mxm' '--without-psm' '--without-ucx' '--without-fca' '--without-knem' '--without-hcoll' '--without-ofi' '--without-xpmem' '--without-cma' '--without-verbs' '--without-cray-xpmem' '--without-loadleveler' '--without-alps' '--without-sge' '--without-lsf' '--without-slurm' '--without-tm' '--disable-memchecker' '--with-libevent=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libevent-2.1.12-eikbakv4aqqnd2i5a7rminoccl2rw6a6' '--with-zlib=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7sovaylq' '--with-hwloc=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-2.7.1-i5ayu7korr7gkh6qtnglfrh7uii2a2eo' '--disable-java' '--disable-mpi-java' '--with-gpfs=no' '--without-cuda' '--enable-wrapper-rpath' '--disable-wrapper-runpath'
29 errors found in build log:
576 libtoolize: copying file './config/ltsugar.m4'
577 libtoolize: copying file './config/ltversion.m4'
578 libtoolize: copying file './config/lt~obsolete.m4'
579 autoreconf: running: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/autoconf-2.
69-l4m7iqwqvujolsojtwrvktux4dcoa2ad/bin/autoconf --include=config --force --warnings=a
ll,no-obsolete,no-override
580 autoreconf: running: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/autoconf-2.
69-l4m7iqwqvujolsojtwrvktux4dcoa2ad/bin/autoheader --include=config --force --warnings
=all,no-obsolete,no-override
581 autoreconf: running: automake --add-missing --copy --force-missing --warnings=all,no-o
bsolete,no-override
>> 582 configure.ac:211: installing './config/ar-lib'
>> 583 configure.ac:113: installing './config/compile'
>> 584 configure.ac:98: installing './config/config.guess'
>> 585 configure.ac:98: installing './config/config.sub'
>> 586 configure.ac:101: installing './config/install-sh'
>> 587 configure.ac:101: installing './config/missing'
588 examples/Makefile.am: installing './config/depcomp'
589 configure.ac: installing './config/ylwrap'
590 parallel-tests: installing './config/test-driver'
591 autoreconf: Leaving directory `.'
592 === Patching PGI compiler version numbers in ltmain.sh
593 === Patching "-pthread" option for NAG compiler in ltmain.sh
...
783 libtoolize: copying file 'config/ltsugar.m4'
784 libtoolize: copying file 'config/ltversion.m4'
785 libtoolize: copying file 'config/lt~obsolete.m4'
786 autoreconf: running: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/autoconf-2.
69-l4m7iqwqvujolsojtwrvktux4dcoa2ad/bin/autoconf --include=config --force --warnings=a
ll,no-obsolete,no-override
787 autoreconf: running: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/autoconf-2.
69-l4m7iqwqvujolsojtwrvktux4dcoa2ad/bin/autoheader --include=config --force --warnings
=all,no-obsolete,no-override
788 autoreconf: running: automake --add-missing --copy --force-missing --warnings=all,no-o
bsolete,no-override
>> 789 configure.ac:118: installing 'config/compile'
>> 790 configure.ac:105: installing 'config/config.guess'
>> 791 configure.ac:105: installing 'config/config.sub'
>> 792 configure.ac:132: installing 'config/install-sh'
>> 793 configure.ac:132: installing 'config/missing'
794 src/Makefile.am: installing 'config/depcomp'
795 configure.ac: installing 'config/ylwrap'
796 autoreconf: Leaving directory `.'
797 === Patching PGI compiler version numbers in ltmain.sh
798 === Patching "-pthread" option for NAG compiler in ltmain.sh
799
...
835 libtoolize: copying file 'confdb/ltsugar.m4'
836 libtoolize: copying file 'confdb/ltversion.m4'
837 libtoolize: copying file 'confdb/lt~obsolete.m4'
838 autoreconf: running: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/autoconf-2.
69-l4m7iqwqvujolsojtwrvktux4dcoa2ad/bin/autoconf --include=confdb --force
839 autoreconf: running: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/autoconf-2.
69-l4m7iqwqvujolsojtwrvktux4dcoa2ad/bin/autoheader --include=confdb --force
840 autoreconf: running: automake --add-missing --copy --force-missing
>> 841 configure.ac:50: installing 'confdb/ar-lib'
>> 842 configure.ac:42: installing 'confdb/compile'
>> 843 configure.ac:52: installing 'confdb/config.guess'
>> 844 configure.ac:52: installing 'confdb/config.sub'
>> 845 configure.ac:38: installing 'confdb/install-sh'
>> 846 configure.ac:38: installing 'confdb/missing'
847 Makefile.am: installing 'confdb/depcomp'
848 autoreconf: Leaving directory `.'
849 === running autoreconf in 'mpl' ===
850 autoreconf: Entering directory `.'
851 autoreconf: configure.ac: not using Gettext
852 autoreconf: running: aclocal --force -I confdb
...
860 libtoolize: copying file 'confdb/ltsugar.m4'
861 libtoolize: copying file 'confdb/ltversion.m4'
862 libtoolize: copying file 'confdb/lt~obsolete.m4'
863 autoreconf: running: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/autoconf-2.
69-l4m7iqwqvujolsojtwrvktux4dcoa2ad/bin/autoconf --force
864 autoreconf: running: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/autoconf-2.
69-l4m7iqwqvujolsojtwrvktux4dcoa2ad/bin/autoheader --force
865 autoreconf: running: automake --add-missing --copy --force-missing
>> 866 configure.ac:24: installing 'confdb/ar-lib'
>> 867 configure.ac:18: installing 'confdb/compile'
>> 868 configure.ac:30: installing 'confdb/config.guess'
>> 869 configure.ac:30: installing 'confdb/config.sub'
>> 870 configure.ac:15: installing 'confdb/install-sh'
>> 871 configure.ac:15: installing 'confdb/missing'
872 Makefile.am: installing 'confdb/depcomp'
873 parallel-tests: installing 'confdb/test-driver'
874 autoreconf: Leaving directory `.'
875 Patching configure for Libtool PGI 10 fortran compiler name
876 Patching configure for Libtool PGI version number regexps
877 Patching configure for flang Fortran ()
...
909 libtoolize: copying file 'config/ltsugar.m4'
910 libtoolize: copying file 'config/ltversion.m4'
911 libtoolize: copying file 'config/lt~obsolete.m4'
912 autoreconf: running: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/autoconf-2.
69-l4m7iqwqvujolsojtwrvktux4dcoa2ad/bin/autoconf --include=config --force --warnings=a
ll,no-obsolete,no-override
913 autoreconf: running: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/autoconf-2.
69-l4m7iqwqvujolsojtwrvktux4dcoa2ad/bin/autoheader --include=config --force --warnings
=all,no-obsolete,no-override
914 autoreconf: running: automake --add-missing --copy --force-missing --warnings=all,no-o
bsolete,no-override
>> 915 configure.ac:367: installing 'config/compile'
>> 916 configure.ac:96: installing 'config/config.guess'
>> 917 configure.ac:96: installing 'config/config.sub'
>> 918 configure.ac:108: installing 'config/install-sh'
>> 919 configure.ac:108: installing 'config/missing'
920 3rd-party/treematch/Makefile.am: installing 'config/depcomp'
921 parallel-tests: installing 'config/test-driver'
922 configure.ac: installing 'config/ylwrap'
923 autoreconf: Leaving directory `.'
924 === Patching PGI compiler version numbers in ltmain.sh
925 === Patching "-pthread" option for NAG compiler in ltmain.sh
...
1807 checking for flex... no
1808 checking for lex... no
1809 configure: WARNING: *** Could not find Flex on your system.
1810 configure: WARNING: *** Flex is required for developer builds of Open MPI.
1811 configure: WARNING: *** Other versions of Lex are not supported.
1812 configure: WARNING: *** NOTE: If you are building a tarball downloaded from www.open-m
pi.org, you do not need Flex
>> 1813 configure: error: Cannot continue
See build log for details:
/tmp/root/spack-stage/spack-stage-openmpi-main-ccf6ioemc73y22b4r4ney7qmpyn2b34i/spack-build-out.txt
Traceback (most recent call last):
File "/usr/local/lib/python3.10/dist-packages/spliced/experiment/spack.py", line 121, in do_install
spec.package.do_install(force=True)
File "/spack/lib/spack/spack/package_base.py", line 1905, in do_install
builder.install()
File "/spack/lib/spack/spack/installer.py", line 1699, in install
self._install_task(task)
File "/spack/lib/spack/spack/installer.py", line 1233, in _install_task
spack.build_environment.start_build_process(
File "/spack/lib/spack/spack/build_environment.py", line 1200, in start_build_process
raise child_result
spack.build_environment.ChildError: ProcessError: Command exited with status 1:
'/tmp/root/spack-stage/spack-stage-openmpi-main-ccf6ioemc73y22b4r4ney7qmpyn2b34i/spack-src/configure' '--prefix=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-main-ccf6ioemc73y22b4r4ney7qmpyn2b34i' '--enable-shared' '--disable-silent-rules' '--disable-builtin-atomics' '--enable-static' '--enable-mpi1-compatibility' '--without-psm2' '--without-mxm' '--without-psm' '--without-ucx' '--without-fca' '--without-knem' '--without-hcoll' '--without-ofi' '--without-xpmem' '--without-cma' '--without-verbs' '--without-cray-xpmem' '--without-loadleveler' '--without-alps' '--without-sge' '--without-lsf' '--without-slurm' '--without-tm' '--disable-memchecker' '--with-libevent=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libevent-2.1.12-eikbakv4aqqnd2i5a7rminoccl2rw6a6' '--with-zlib=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7sovaylq' '--with-hwloc=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-2.7.1-i5ayu7korr7gkh6qtnglfrh7uii2a2eo' '--disable-java' '--disable-mpi-java' '--with-gpfs=no' '--without-cuda' '--enable-wrapper-rpath' '--disable-wrapper-runpath'Tested a second time - more mpi bugs so we cannot build original.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice adios2 --runner spack --replace adios2 --experiment openpmd-api --outfile /results/openpmd-api/0.11.1/adios2/experiment.json
==> Error: ProcessError: Command exited with status 1:
'cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openpmd-api-0.11.1-fhdp7nfpzfaaz52o5ilhk2bgfyvgsvmj' '-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo' '-DBUILD_TESTING:BOOL=OFF' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_VERBOSE_MAKEFILE:BOOL=ON' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON' '-DCMAKE_INSTALL_RPATH:STRING=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openpmd-api-0.11.1-fhdp7nfpzfaaz52o5ilhk2bgfyvgsvmj/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openpmd-api-0.11.1-fhdp7nfpzfaaz52o5ilhk2bgfyvgsvmj/lib64;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/adios2-2.8.2-bkhq7gjkpxi7xs53fcbhd4fgpxgiv33h/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/bzip2-1.0.8-ya4ug5vmw7aniehgduokbk7vjk6nnpiu/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/c-blosc-1.21.1-ilmlanom4taf3dzebghkme2pphyqw4ni/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/lz4-1.9.3-exgubctolejmf5x45kogxvp55ax4vxmi/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/snappy-1.1.9-iwbmapmpzvxgeqk6gw5mdgszukctik5u/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7sovaylq/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zstd-1.5.2-eejca7y2axvxog65dssarq4ebcj2otlu/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libfabric-1.14.1-o2jqamajbpuia77ukdic2gl4uecomxpd/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libffi-3.4.2-mhxy22owln7ofc6s3auicpwmcdvcydar/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libpng-1.6.37-kf3i42l7yqde2a43egkmnqkwrnrr7dhd/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-2.7.1-i5ayu7korr7gkh6qtnglfrh7uii2a2eo/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libpciaccess-0.16-fdqihaqivzq7jfv2bvhl4jtpji6lhi5n/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libxml2-2.9.13-5crpofret7ivv3tp5ls6zv6msqot2xnx/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libiconv-1.16-yuly674bkth5o6pwr2r4yjlqn37veokj/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/xz-5.2.5-453s3chw5hjari5ttv4t26jj3vqogyjr/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/ncurses-6.2-vwwyeulbfzoa4b3eimalm52bwtcf77rf/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/numactl-2.0.14-wf2qo4fov2buxvoj4xbgyj7g27lbaq6q/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/pmix-4.1.2-77l2xoffatjou7q7asvgoe5x4wkkcx45/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libevent-2.1.12-eikbakv4aqqnd2i5a7rminoccl2rw6a6/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openssl-1.1.1q-3s72rwr6sei7t2bgnalx6sqno7xs6xqb/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/sz-2.1.12.2-fpizk225dbj7ifhfnpjyma6nrtoltxrr/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zfp-0.5.5-k3vqem5tldcx4bdejxrvqe6hgrhdb3nk/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hdf5-1.12.2-godyvkcwlaxwahxwhmsquzba4l5vd6lx/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/mpark-variant-1.4.0-mp65jzqsihdu4rjc2qzeksxhje2ujbp2/lib;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/nlohmann-json-3.10.5-gbep6sj7r6o77skebrmynsdcs35kjx52/lib' '-DCMAKE_PREFIX_PATH:STRING=/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/nlohmann-json-3.10.5-gbep6sj7r6o77skebrmynsdcs35kjx52;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/mpark-variant-1.4.0-mp65jzqsihdu4rjc2qzeksxhje2ujbp2;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hdf5-1.12.2-godyvkcwlaxwahxwhmsquzba4l5vd6lx;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/adios2-2.8.2-bkhq7gjkpxi7xs53fcbhd4fgpxgiv33h;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zfp-0.5.5-k3vqem5tldcx4bdejxrvqe6hgrhdb3nk;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/sz-2.1.12.2-fpizk225dbj7ifhfnpjyma6nrtoltxrr;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/pmix-4.1.2-77l2xoffatjou7q7asvgoe5x4wkkcx45;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libevent-2.1.12-eikbakv4aqqnd2i5a7rminoccl2rw6a6;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/numactl-2.0.14-wf2qo4fov2buxvoj4xbgyj7g27lbaq6q;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-2.7.1-i5ayu7korr7gkh6qtnglfrh7uii2a2eo;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libxml2-2.9.13-5crpofret7ivv3tp5ls6zv6msqot2xnx;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/xz-5.2.5-453s3chw5hjari5ttv4t26jj3vqogyjr;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libpciaccess-0.16-fdqihaqivzq7jfv2bvhl4jtpji6lhi5n;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libpng-1.6.37-kf3i42l7yqde2a43egkmnqkwrnrr7dhd;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libffi-3.4.2-mhxy22owln7ofc6s3auicpwmcdvcydar;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libfabric-1.14.1-o2jqamajbpuia77ukdic2gl4uecomxpd;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/c-blosc-1.21.1-ilmlanom4taf3dzebghkme2pphyqw4ni;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zstd-1.5.2-eejca7y2axvxog65dssarq4ebcj2otlu;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/snappy-1.1.9-iwbmapmpzvxgeqk6gw5mdgszukctik5u;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/lz4-1.9.3-exgubctolejmf5x45kogxvp55ax4vxmi;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openssl-1.1.1q-3s72rwr6sei7t2bgnalx6sqno7xs6xqb;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7sovaylq;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/ncurses-6.2-vwwyeulbfzoa4b3eimalm52bwtcf77rf;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/bzip2-1.0.8-ya4ug5vmw7aniehgduokbk7vjk6nnpiu;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/libiconv-1.16-yuly674bkth5o6pwr2r4yjlqn37veokj' '-DBUILD_SHARED_LIBS:BOOL=ON' '-DopenPMD_USE_MPI:BOOL=ON' '-DopenPMD_USE_HDF5:BOOL=ON' '-DopenPMD_USE_ADIOS1:BOOL=OFF' '-DopenPMD_USE_ADIOS2:BOOL=ON' '-DopenPMD_USE_PYTHON:BOOL=OFF' '-DBUILD_TESTING:BOOL=OFF' '-DBUILD_EXAMPLES:BOOL=OFF' '-DopenPMD_USE_INTERNAL_JSON:BOOL=OFF' '-DopenPMD_USE_INTERNAL_VARIANT:BOOL=OFF' '/tmp/root/spack-stage/spack-stage-openpmd-api-0.11.1-fhdp7nfpzfaaz52o5ilhk2bgfyvgsvmj/spack-src'
1 error found in build log:
15 -- Found MPI_C: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmi
py3bjhsk5dbioidlwxm2oeyqso4b/lib/libmpi.so (found version "3.1")
16 -- Found MPI_CXX: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cq
mipy3bjhsk5dbioidlwxm2oeyqso4b/lib/libmpi.so (found version "3.1")
17 -- Found MPI: TRUE (found version "3.1")
18 -- Found nlohmann_json: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/nlohmann-j
son-3.10.5-gbep6sj7r6o77skebrmynsdcs35kjx52/lib/cmake/nlohmann_json/nlohmann_jsonConfig.
cmake (found suitable version "3.10.5", minimum required is "3.7.0")
19 -- nlohmann-json: Found version 3.10.5
20 -- Found HDF5: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hdf5-1.12.2-godyvkc
wlaxwahxwhmsquzba4l5vd6lx/lib/libhdf5.so;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-
11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/lib/libmpi.so (found suitable vers
ion "1.12.2", minimum required is "1.8.13") found components: C
>> 21 CMake Error at CMakeLists.txt:157 (message):
22 Found MPI but only serial version of HDF5. Either set openPMD_USE_MPI=OFF
23 to disable MPI or set openPMD_USE_HDF5=OFF to disable HDF5 or provide a
24 parallel install of HDF5.
25
26
27 -- Configuring incomplete, errors occurred!
See build log for details:
/tmp/root/spack-stage/spack-stage-openpmd-api-0.11.1-fhdp7nfpzfaaz52o5ilhk2bgfyvgsvmj/spack-build-out.txt
Traceback (most recent call last):
File "/usr/local/lib/python3.10/dist-packages/spliced/experiment/spack.py", line 121, in do_install
spec.package.do_install(force=True)
File "/spack/lib/spack/spack/package_base.py", line 1905, in do_install
builder.install()
File "/spack/lib/spack/spack/installer.py", line 1699, in install
self._install_task(task)
File "/spack/lib/spack/spack/installer.py", line 1233, in _install_task
spack.build_environment.start_build_process(
File "/spack/lib/spack/spack/build_environment.py", line 1200, in start_build_process
raise child_result
spack.build_environment.ChildError: ProcessError: Command exited with status 1:
'cmake' '-G' 'Unix Makefiles' '-DCMAKE_INSTALL_PREFIX:STRING=/spack/opt/spack/linux-ubuntu22.04-docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice cmake --runner spack --replace cmake --experiment slate --outfile /results/slate/2020.10.00/cmake/experiment.json
1 error found in build log:
16 flags:
17 -DFORTRAN_ADD_ no (didn't link: routine not found)
18 -DFORTRAN_LOWER no (didn't link: routine not found)
19 -DFORTRAN_UPPER no (didn't link: routine not found)
20
21 BLAS library not found.
>> 22 CMake Error at CMakeLists.txt:295 (message):
23 BLAS++ requires a BLAS library and none was found. Ensure that it is
24 accessible in environment variables $CPATH, $LIBRARY_PATH, and
25 $LD_LIBRARY_PATH.
26
27
28 -- Configuring incomplete, errors occurred!
See build log for details:
/tmp/root/spack-stage/spack-stage-blaspp-2020.10.02-ybvedwhzmwgydorzzpqz2yjfpetykn34/spack-build-out.txtdocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice python --runner spack --replace python --experiment petsc --outfile /results/petsc/3.10.0/python/experiment.json
==> [2022-07-28-19:11:54.887419, 11] 11: superlu-dist: Executing phase: 'cmake'
==> [2022-07-28-19:11:56.389064, 11] 11: superlu-dist: Executing phase: 'build'
==> [2022-07-28-19:12:07.225604, 11] WRITE LOCK (spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73): /tmp/root/spack-stage/.lock[1936176548018551543:1] [Released at 19:12:07.225561]
==> [2022-07-28-19:12:07.248230, 1] Error: ProcessError: Command exited with status 2:
'make' '-j8'
33 errors found in build log:
936 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFi
les/pddrive1_ABglobal.dir/link.txt --verbose=1
937 [ 82%] Building C object EXAMPLE/CMakeFiles/pddrive2.dir/dcreate_matrix.c.o
938 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/sp
ack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC
-I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg
5x4iik7s4hi6xynrp/include -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/meti
s-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack-stage-s
uperlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/SRC -I/spack/opt/spack/li
nux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/includ
e -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnj
kg5x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -MD -MT EXAMPL
E/CMakeFiles/pddrive2.dir/dcreate_matrix.c.o -MF CMakeFiles/pddrive2.dir/dcreate_matri
x.c.o.d -o CMakeFiles/pddrive2.dir/dcreate_matrix.c.o -c /tmp/root/spack-stage/spack-s
tage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/EXAMPLE/dcreate_mat
rix.c
939 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioi
dlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis
-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR
_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive1_ABglobal.dir/pddrive1_AB
global.c.o -o pddrive1_ABglobal -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-
dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC:/spack/opt/spack/l
inux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/l
ib ../SRC/libsuperlu_dist.so.5.4.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2
.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/op
t/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi
6xynrp/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.
1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
940 [ 82%] Building C object TEST/CMakeFiles/pdtest.dir/dcreate_matrix.c.o
941 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/TEST && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/spack
-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC -I/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4
iik7s4hi6xynrp/include -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5
.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack-stage-supe
rlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/SRC -I/spack/opt/spack/linux
-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -
I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5
x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -MD -MT TEST/CMak
eFiles/pdtest.dir/dcreate_matrix.c.o -MF CMakeFiles/pdtest.dir/dcreate_matrix.c.o.d -o
CMakeFiles/pdtest.dir/dcreate_matrix.c.o -c /tmp/root/spack-stage/spack-stage-superlu
-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/TEST/dcreate_matrix.c
>> 942 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 943 collect2: error: ld returned 1 exit status
>> 944 make[2]: *** [EXAMPLE/CMakeFiles/pddrive_ABglobal.dir/build.make:102: EXAMPLE/pddrive_
ABglobal] Error 1
945 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 946 make[1]: *** [CMakeFiles/Makefile2:385: EXAMPLE/CMakeFiles/pddrive_ABglobal.dir/all] E
rror 2
947 make[1]: *** Waiting for unfinished jobs....
948 [ 83%] Building C object TEST/CMakeFiles/pdtest.dir/pdcompute_resid.c.o
949 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/TEST && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/spack
-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC -I/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4
iik7s4hi6xynrp/include -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5
.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack-stage-supe
rlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/SRC -I/spack/opt/spack/linux
-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -
I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5
x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -MD -MT TEST/CMak
eFiles/pdtest.dir/pdcompute_resid.c.o -MF CMakeFiles/pdtest.dir/pdcompute_resid.c.o.d
-o CMakeFiles/pdtest.dir/pdcompute_resid.c.o -c /tmp/root/spack-stage/spack-stage-supe
rlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/TEST/pdcompute_resid.c
950 [ 84%] Linking C executable pddrive4
>> 951 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
952 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFi
les/pddrive4.dir/link.txt --verbose=1
>> 953 collect2: error: ld returned 1 exit status
>> 954 make[2]: *** [EXAMPLE/CMakeFiles/pddrive1_ABglobal.dir/build.make:102: EXAMPLE/pddrive
1_ABglobal] Error 1
955 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 956 make[1]: *** [CMakeFiles/Makefile2:411: EXAMPLE/CMakeFiles/pddrive1_ABglobal.dir/all]
Error 2
957 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioi
dlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis
-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR
_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive4.dir/pddrive4.c.o CMakeFi
les/pddrive4.dir/dcreate_matrix.c.o -o pddrive4 -Wl,-rpath,/tmp/root/spack-stage/spac
k-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC:/s
pack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuq
vsax4jlr5yqgc4/lib ../SRC/libsuperlu_dist.so.5.4.0 /spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so
-lm -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3
lnjkg5x4iik7s4hi6xynrp/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc
-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
958 [ 84%] Building C object EXAMPLE/CMakeFiles/pddrive2.dir/dcreate_matrix_perturbed.c.o
959 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/sp
ack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC
-I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg
5x4iik7s4hi6xynrp/include -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/meti
s-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack-stage-s
uperlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/SRC -I/spack/opt/spack/li
nux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/includ
e -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnj
kg5x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -MD -MT EXAMPL
E/CMakeFiles/pddrive2.dir/dcreate_matrix_perturbed.c.o -MF CMakeFiles/pddrive2.dir/dcr
eate_matrix_perturbed.c.o.d -o CMakeFiles/pddrive2.dir/dcreate_matrix_perturbed.c.o -c
/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73
/spack-src/EXAMPLE/dcreate_matrix_perturbed.c
960 [ 85%] Linking C executable pddrive
961 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFi
les/pddrive.dir/link.txt --verbose=1
962 [ 85%] Linking C executable pddrive1
...
966 [ 86%] Linking C executable pddrive3
967 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFi
les/pddrive3.dir/link.txt --verbose=1
968 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioi
dlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis
-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR
_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive3.dir/pddrive3.c.o CMakeFi
les/pddrive3.dir/dcreate_matrix.c.o -o pddrive3 -Wl,-rpath,/tmp/root/spack-stage/spac
k-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC:/s
pack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuq
vsax4jlr5yqgc4/lib ../SRC/libsuperlu_dist.so.5.4.0 /spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so
-lm -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3
lnjkg5x4iik7s4hi6xynrp/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc
-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
969 [ 86%] Linking C executable pdtest
970 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/TEST && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/c
make-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pdtest.dir/link.txt --verbose=1
971 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioi
dlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis
-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR
_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles/pdtest.dir/pdtest.c.o CMakeFiles/
pdtest.dir/dcreate_matrix.c.o CMakeFiles/pdtest.dir/pdcompute_resid.c.o -o pdtest -Wl
,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjj
w3wdb73/spack-build-atky62e/SRC:/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsuperlu_dist.so.5.4.0 /
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihu
qvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/linux-ubuntu22.04-skylake/gc
c-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparmetis -L/spack/opt/s
pack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg
/lib -lmetis
>> 972 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 973 collect2: error: ld returned 1 exit status
>> 974 make[2]: *** [EXAMPLE/CMakeFiles/pddrive4.dir/build.make:118: EXAMPLE/pddrive4] Error
1
975 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 976 make[1]: *** [CMakeFiles/Makefile2:359: EXAMPLE/CMakeFiles/pddrive4.dir/all] Error 2
>> 977 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 978 collect2: error: ld returned 1 exit status
>> 979 make[2]: *** [EXAMPLE/CMakeFiles/pddrive.dir/build.make:118: EXAMPLE/pddrive] Error 1
980 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 981 make[1]: *** [CMakeFiles/Makefile2:255: EXAMPLE/CMakeFiles/pddrive.dir/all] Error 2
>> 982 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 983 collect2: error: ld returned 1 exit status
>> 984 make[2]: *** [EXAMPLE/CMakeFiles/pddrive1.dir/build.make:118: EXAMPLE/pddrive1] Error
1
985 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 986 make[1]: *** [CMakeFiles/Makefile2:281: EXAMPLE/CMakeFiles/pddrive1.dir/all] Error 2
>> 987 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 988 collect2: error: ld returned 1 exit status
>> 989 make[2]: *** [EXAMPLE/CMakeFiles/pddrive3.dir/build.make:118: EXAMPLE/pddrive3] Error
1
990 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 991 make[1]: *** [CMakeFiles/Makefile2:333: EXAMPLE/CMakeFiles/pddrive3.dir/all] Error 2
992 [ 87%] Linking C executable pddrive2
993 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFi
les/pddrive2.dir/link.txt --verbose=1
994 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioi
dlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis
-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR
_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive2.dir/pddrive2.c.o CMakeFi
les/pddrive2.dir/dcreate_matrix.c.o CMakeFiles/pddrive2.dir/dcreate_matrix_perturbed.c
.o -o pddrive2 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62
eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC:/spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsupe
rlu_dist.so.5.4.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.2
0-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/linux-ubu
ntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparm
etis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfq
wrw3xh7lbb7q7gz77sg/lib -lmetis
>> 995 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 996 collect2: error: ld returned 1 exit status
>> 997 make[2]: *** [TEST/CMakeFiles/pdtest.dir/build.make:134: TEST/pdtest] Error 1
998 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 999 make[1]: *** [CMakeFiles/Makefile2:229: TEST/CMakeFiles/pdtest.dir/all] Error 2
>> 1000 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 1001 collect2: error: ld returned 1 exit status
>> 1002 make[2]: *** [EXAMPLE/CMakeFiles/pddrive2.dir/build.make:134: EXAMPLE/pddrive2] Error
1
1003 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 1004 make[1]: *** [CMakeFiles/Makefile2:307: EXAMPLE/CMakeFiles/pddrive2.dir/all] Error 2
1005 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 1006 make: *** [Makefile:149: all] Error 2
See build log for details:
/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-out.txtdocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice hwloc --runner spack --replace hwloc --experiment tau --outfile /results/tau/2.23.1/hwloc/experiment.json
==> [2022-07-28-19:13:27.872193, 11] 11: tau: Executing phase: 'install'
==> [2022-07-28-19:13:39.528399, 11] WRITE LOCK (spack-stage-tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375): /tmp/root/spack-stage/.lock[6592751899076257295:1] [Released at 19:13:39.528360]
==> [2022-07-28-19:13:39.549241, 1] Error: ProcessError: Command exited with status 2:
'make' '-j8' 'install'
15 errors found in build log:
57 TAU: PDT: Using binary rewriting capabilities from PEBIL in tau_pebil_rewrite
58 ====================================================
59 Copy /tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/sp
ack-src/tools/src/contrib/CubeReader.jar to /spack/opt/spack/linux-ubuntu22.04-skylake
/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/x86_64/lib
60 ====================================================
61 ... done
62 ***********************************************************************
>> 63 grep: ./utils/FixMakefile.info: No such file or directory
>> 64 grep: ./utils/FixMakefile.sed: No such file or directory
65 NOTE: Enabled Profiling. Compiling with -DPROFILING_ON
66 NOTE: Building POSIX I/O wrapper
67 NOTE: GNU gfortran compiler specific options used
68 NOTE: Using PAPI interface for Hardware Performance Counters ***
69 NOTE: Using PAPI with -lpfm option ***
70 NOTE: Using default cc compiler.
...
160 rm -f trace2profile/trace2profile handlers.o handlers.*.~* readTrace.o readTrace.*.~*
Makefile.~* *.o otf2profile
161 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/utils/otf2profile'
162 make[1]: Entering directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7
lkhhi3q3vcjtctouw375/spack-src/examples/instrument'
163 /bin/rm -f simple.o simple
164 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/examples/instrument'
165 make[1]: Entering directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7
lkhhi3q3vcjtctouw375/spack-src/examples/threads'
>> 166 Makefile:16: /tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctou
w375/spack-src/x86_64/lib/Makefile.tau-papi-pthread-pdt: No such file or directory
>> 167 make[1]: *** No rule to make target '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spff
masbg5g7lkhhi3q3vcjtctouw375/spack-src/x86_64/lib/Makefile.tau-papi-pthread-pdt'. Sto
p.
168 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/examples/threads'
169 make[1]: Entering directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7
lkhhi3q3vcjtctouw375/spack-src/examples/cthreads'
>> 170 Makefile:16: /tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctou
w375/spack-src/x86_64/lib/Makefile.tau-papi-pthread-pdt: No such file or directory
>> 171 make[1]: *** No rule to make target '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spff
masbg5g7lkhhi3q3vcjtctouw375/spack-src/x86_64/lib/Makefile.tau-papi-pthread-pdt'. Sto
p.
172 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/examples/cthreads'
173 make[1]: Entering directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7
lkhhi3q3vcjtctouw375/spack-src/examples/fortran'
174 /bin/rm -f hello.o hello
175 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/examples/fortran'
176 make[1]: Entering directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7
lkhhi3q3vcjtctouw375/spack-src/examples/f90'
177 /bin/rm -f cubes.o cubes
178 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/examples/f90'
179 make[1]: Entering directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7
lkhhi3q3vcjtctouw375/spack-src/examples/autoinstrument'
>> 180 Makefile:16: /tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctou
w375/spack-src/x86_64/lib/Makefile.tau-papi-pthread-pdt: No such file or directory
>> 181 make[1]: *** No rule to make target '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spff
masbg5g7lkhhi3q3vcjtctouw375/spack-src/x86_64/lib/Makefile.tau-papi-pthread-pdt'. Sto
p.
182 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/examples/autoinstrument'
183 make[1]: Entering directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7
lkhhi3q3vcjtctouw375/spack-src/examples/reduce'
>> 184 Makefile:16: /tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctou
w375/spack-src/x86_64/lib/Makefile.tau-papi-pthread-pdt: No such file or directory
>> 185 make[1]: *** No rule to make target '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spff
masbg5g7lkhhi3q3vcjtctouw375/spack-src/x86_64/lib/Makefile.tau-papi-pthread-pdt'. Sto
p.
186 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/examples/reduce'
187 touch .clean
188 Determining Configuration...
189 System previously configured as a x86_64
190 *********** RECURSIVELY MAKING SUBDIRECTORIES ***********
191 *** COMPILING src/TraceInput DIRECTORY
...
231 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.2
3.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04
-skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spac
k/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnv
nvh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-m
aster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.
04-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,
/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3ba
exsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.
0.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.
04-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spac
k/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7
sovaylq/lib -I../include -w -DTAU_USE_SIZE_INSTEAD_OF_SIZEOF -I/spack/opt/sp
ack/linux-ubuntu22.04-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/i
nclude -c tau_instrument.cpp
232 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23
.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnvn
vh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-ma
ster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3bae
xsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.0
.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7s
ovaylq/lib -c -o process_c.o process_c.cc
233 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23
.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnvn
vh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-ma
ster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3bae
xsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.0
.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7s
ovaylq/lib -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23.1-spffmasb
g5g7lkhhi3q3vcjtctouw375/include -I. -c readTrace.cpp
234 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.2
3.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04
-skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spac
k/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnv
nvh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-m
aster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.
04-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,
/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3ba
exsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.
0.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.
04-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spac
k/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7
sovaylq/lib -I../include -w -DTAU_USE_SIZE_INSTEAD_OF_SIZEOF -I/spack/opt/sp
ack/linux-ubuntu22.04-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/i
nclude -c tau_selective.cpp
235 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23
.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnvn
vh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-ma
ster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3bae
xsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.0
.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7s
ovaylq/lib -I../include -w -DTAU_GNU -DTAU_DOT_H_LESS_HEADERS -fPIC tau2otf
2.cpp -c -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hg
bte4u37n3baexsaswuox/include
236 tau_instrumentor.cpp: In function 'int printTauAllocStmt(std::ifstream&, std::ofstream
&, char*, std::vector<itemRef*>::iterator&, char*&)':
>> 237 tau_instrumentor.cpp:2702:47: error: no match for 'operator==' (operand types are 'std
::basic_istream<char>::__istream_type' {aka 'std::basic_istream<char>'} and 'long int'
)
238 2702 | if (istr.getline(allocstmt, INBUF_SIZE) == NULL) {
239 | ^
240 tau_instrumentor.cpp:2702:47: note: candidate: 'operator==(int, long int)' (built-in)
241 tau_instrumentor.cpp:2702:47: note: no known conversion for argument 1 from 'std::ba
sic_istream<char>::__istream_type' {aka 'std::basic_istream<char>'} to 'int'
242 In file included from /usr/include/c++/11/iosfwd:40,
243 from /usr/include/c++/11/ios:38,
...
894 408 | operator==(const error_condition& __lhs, const error_code& __rhs) noexcept
895 | ^~~~~~~~
896 /usr/include/c++/11/system_error:408:37: note: no known conversion for argument 1 fr
om 'std::basic_istream<char>::__istream_type' {aka 'std::basic_istream<char>'} to 'con
st std::error_condition&'
897 408 | operator==(const error_condition& __lhs, const error_code& __rhs) noexcept
898 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
899 tau_instrumentor.cpp: In function 'int printTauDeallocStmt(std::ifstream&, std::ofstre
am&, char*, std::vector<itemRef*>::iterator&, bool, char*&)':
>> 900 tau_instrumentor.cpp:2810:50: error: no match for 'operator==' (operand types are 'std
::basic_istream<char>::__istream_type' {aka 'std::basic_istream<char>'} and 'long int'
)
901 2810 | if (istr.getline(deallocstmt, INBUF_SIZE) == NULL)
902 | ^
903 tau_instrumentor.cpp:2810:50: note: candidate: 'operator==(int, long int)' (built-in)
904 tau_instrumentor.cpp:2810:50: note: no known conversion for argument 1 from 'std::ba
sic_istream<char>::__istream_type' {aka 'std::basic_istream<char>'} to 'int'
905 In file included from /usr/include/c++/11/iosfwd:40,
906 from /usr/include/c++/11/ios:38,
...
1558 408 | operator==(const error_condition& __lhs, const error_code& __rhs) noexcept
1559 | ^~~~~~~~
1560 /usr/include/c++/11/system_error:408:37: note: no known conversion for argument 1 fr
om 'std::basic_istream<char>::__istream_type' {aka 'std::basic_istream<char>'} to 'con
st std::error_condition&'
1561 408 | operator==(const error_condition& __lhs, const error_code& __rhs) noexcept
1562 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
1563 tau_instrumentor.cpp: In function 'int printTauIOStmt(std::ifstream&, std::ofstream&,
char*, std::vector<itemRef*>::iterator&, bool, char*&)':
>> 1564 tau_instrumentor.cpp:2923:42: error: no match for 'operator==' (operand types are 'std
::basic_istream<char>::__istream_type' {aka 'std::basic_istream<char>'} and 'long int'
)
1565 2923 | if (istr.getline(iostmt, INBUF_SIZE) == NULL)
1566 | ^
1567 tau_instrumentor.cpp:2923:42: note: candidate: 'operator==(int, long int)' (built-in)
1568 tau_instrumentor.cpp:2923:42: note: no known conversion for argument 1 from 'std::ba
sic_istream<char>::__istream_type' {aka 'std::basic_istream<char>'} to 'int'
1569 In file included from /usr/include/c++/11/iosfwd:40,
1570 from /usr/include/c++/11/ios:38,
...
2221 408 | operator==(const error_condition& __lhs, const error_code& __rhs) noexcept
2222 | ^~~~~~~~
2223 /usr/include/c++/11/system_error:408:37: note: no known conversion for argument 1 fr
om 'std::basic_istream<char>::__istream_type' {aka 'std::basic_istream<char>'} to 'con
st std::error_condition&'
2224 408 | operator==(const error_condition& __lhs, const error_code& __rhs) noexcept
2225 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~
2226 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.2
3.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04
-skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spac
k/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnv
nvh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-m
aster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.
04-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,
/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3ba
exsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.
0.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.
04-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spac
k/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7
sovaylq/lib -I../include -w -DTAU_USE_SIZE_INSTEAD_OF_SIZEOF -I/spack/opt/sp
ack/linux-ubuntu22.04-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/i
nclude -c tau_wrap.cpp
>> 2227 make[1]: *** [Makefile:88: tau_instrumentor.o] Error 1
2228 make[1]: *** Waiting for unfinished jobs....
2229 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23
.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnvn
vh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-ma
ster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3bae
xsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.0
.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7s
ovaylq/lib -c -o process_f.o process_f.cc
2230 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23
.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnvn
vh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-ma
ster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3bae
xsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.0
.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7s
ovaylq/lib -c -o process_omp.o process_omp.cc
2231 trace2profile.cpp: In function 'void PrintSnapshot(double, Thread&, bool)':
2232 trace2profile.cpp:535:23: warning: ignoring return value of 'int system(const char*)'
declared with attribute 'warn_unused_result' [-Wunused-result]
2233 535 | system(cmd.c_str());
...
2242 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23
.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnvn
vh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-ma
ster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3bae
xsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.0
.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7s
ovaylq/lib -c -o handler.o handler.cc
2243 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23
.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnvn
vh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-ma
ster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3bae
xsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.0
.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7s
ovaylq/lib -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23.1-spffmasb
g5g7lkhhi3q3vcjtctouw375/include -I. -o trace2profile handlers.o readTrace.o trace2pro
file.o -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7
lkhhi3q3vcjtctouw375/x86_64/lib -lTAU_traceinput-papi-pthread-pdt
2244 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/utils/trace2profile'
2245 g++ -O2 -g -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tau-2.23
.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/tau-2.23.1-spffmasbg5g7lkhhi3q3vcjtctouw375/lib64 -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/binutils-2.38-zqz47r4l4a4kwm2aihemxnvn
vh5cf7e2/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-ma
ster-c5kous2suaihqskeyz7pgsoo5o6gfzu4/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/libunwind-1.6.2-yxd45ely5u4e7hzoytnywutyhqmn2byg/lib -Wl,-rpath,/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/otf2-2.3-vsxsupi473hgbte4u37n3bae
xsaswuox/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/papi-6.0
.0.1-y3lgty22prsm6afapbvqpoblackbsxbg/lib -Wl,-rpath,/spack/opt/spack/linux-ubuntu22.0
4-skylake/gcc-11.2.0/pdt-3.25.1-2wuoorprwqorusgcf4nrb7zlpmczo2rz/lib -Wl,-rpath,/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/zlib-1.2.12-y3vm6i6g7ot663ojvxtookqc7s
ovaylq/lib opari.o process_c.o process_f.o process_omp.o ompragma.o ompragma_c.o ompra
gma_f.o ompregion.o handler.o -o opari
2246 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/utils/opari'
2247 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-tau-2.23.1-spffmasbg5g7l
khhi3q3vcjtctouw375/spack-src/utils'
>> 2248 make: *** [Makefile:167: install] Error 2...but there are missing symbols (looks like lib C with @@) so we don't run smeagle.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice hwloc@master --runner spack --replace hwloc --experiment qthreads --outfile /results/qthreads/1.10/hwloc/experiment.jsonmost splices fail, e.g.,
==> hwloc: Executing phase: 'autoreconf'
==> hwloc: Executing phase: 'configure'
==> hwloc: Executing phase: 'build'
==> hwloc: Executing phase: 'install'
==> hwloc: Successfully installed hwloc-2.0.1-g3ka6m442ilr6fvpkazjizhphjd55e35
Fetch: 1.24s. Build: 15.11s. Total: 16.35s.
[+] /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hwloc-2.0.1-g3ka6m442ilr6fvpkazjizhphjd55e35
Traceback (most recent call last):
File "/spack/lib/spack/spack/spec.py", line 3961, in __getitem__
value = next(
StopIteration
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.10/dist-packages/spliced/experiment/spack.py", line 236, in do_splice
spack.rewiring.rewire(spliced_spec)
File "/spack/lib/spack/spack/rewiring.py", line 49, in rewire
rewire_node(spec, explicit)
File "/spack/lib/spack/spack/rewiring.py", line 83, in rewire_node
spliced_build_dep_prefix = get_container_prefix(spec, spec[build_dep.name].prefix)
File "/spack/lib/spack/spack/spec.py", line 3970, in __getitem__
raise KeyError("No spec with name %s in %s" % (name, self))
KeyError: 'No spec with name autoconf in [email protected]%[email protected]+hwloc~spawn_cache+static patches=d9c7ac0,f708d93 scheduler=nemesis stack_size=4096 arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected] arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected]~cairo~cuda~gl~libudev+libxml2~netloc~nvml~oneapi-level-zero~opencl+pci~rocm+shared arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected] libs=shared,static arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected] arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected] arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected] arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected]~python arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected]+sigsegv patches=9dc5fbd,bfdffa7 arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected]~symlinks~termlib abi=none arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected] arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected] arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected]~pic libs=shared,static arch=linux-ubuntu22.04-skylake ^[email protected]%[email protected]+optimize+pic+shared patches=0d38234 arch=linux-ubuntu22.04-skylake'hwloc@master works, but missing symbols from the getgo. Libabigail/abi lab cannot predict because we only have exact matching dependency libraries. Also:
Cannot find needed library libhwloc.so.5For "missing" symbols:
We'd take stderr@GLIBC_2.2.5, look up 'stderr' in .symver, follow the link to the PLT and then version check the GLIBC_2.2.5 suffix. There are details missing there, but that would be the gist.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice [email protected] --runner spack --replace cmake --experiment superlu-dist --outfile /results/superlu-dist/5.0.0/cmake/experiment.json
>> 791 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so
: undefined reference to `_gfortran_concat_string'
And re-run with another cmake splice
==> [2022-07-28-19:17:22.487917, 11] WRITE LOCK (spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k): /tmp/root/spack-stage/.lock[6505392650183886231:1] [Released at 19:17:22.487857]
==> [2022-07-28-19:17:22.507084, 1] Error: ProcessError: Command exited with status 2:
'make' '-j8'
33 errors found in build log:
541 [ 73%] Linking C executable pddrive1_ABglobal
542 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive1_ABglobal.dir/link.txt --verbose=1
543 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive1_ABglobal.dir/pddrive1_ABglobal.c.o -o pd
drive1_ABglobal -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsuperl
u_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4
urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/linux-ubuntu2
2.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparmetis
-L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh
7lbb7q7gz77sg/lib -lmetis
544 [ 74%] Linking C executable pddrive2_ABglobal
545 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive2_ABglobal.dir/link.txt --verbose=1
546 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive2_ABglobal.dir/pddrive2_ABglobal.c.o -o pd
drive2_ABglobal -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsuperl
u_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4
urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/linux-ubuntu2
2.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparmetis
-L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh
7lbb7q7gz77sg/lib -lmetis
>> 547 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 548 collect2: error: ld returned 1 exit status
>> 549 make[2]: *** [EXAMPLE/CMakeFiles/pddrive_ABglobal.dir/build.make:102: EXAMPLE/pddrive_A
Bglobal] Error 1
550 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 551 make[1]: *** [CMakeFiles/Makefile2:313: EXAMPLE/CMakeFiles/pddrive_ABglobal.dir/all] Er
ror 2
552 make[1]: *** Waiting for unfinished jobs....
>> 553 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 554 collect2: error: ld returned 1 exit status
>> 555 make[2]: *** [EXAMPLE/CMakeFiles/pddrive1_ABglobal.dir/build.make:102: EXAMPLE/pddrive1
_ABglobal] Error 1
556 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 557 make[1]: *** [CMakeFiles/Makefile2:339: EXAMPLE/CMakeFiles/pddrive1_ABglobal.dir/all] E
rror 2
558 [ 75%] Linking C executable pddrive
559 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive.dir/link.txt --verbose=1
560 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive.dir/pddrive.c.o CMakeFiles/pddrive.dir/dc
reate_matrix.c.o -o pddrive -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-
5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/linux-u
buntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../S
RC/libsuperlu_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openb
las-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/l
inux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib
-lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxak
ba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
>> 561 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
562 [ 76%] Linking C executable pddrive4
563 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive4.dir/link.txt --verbose=1
>> 564 collect2: error: ld returned 1 exit status
565 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive4.dir/pddrive4.c.o CMakeFiles/pddrive4.dir
/dcreate_matrix.c.o -o pddrive4 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-d
ist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/lin
ux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib
../SRC/libsuperlu_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp
/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77o
rxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
>> 566 make[2]: *** [EXAMPLE/CMakeFiles/pddrive2_ABglobal.dir/build.make:102: EXAMPLE/pddrive2
_ABglobal] Error 1
567 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 568 make[1]: *** [CMakeFiles/Makefile2:365: EXAMPLE/CMakeFiles/pddrive2_ABglobal.dir/all] E
rror 2
569 [ 77%] Linking C executable pddrive1
570 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive1.dir/link.txt --verbose=1
571 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive1.dir/pddrive1.c.o CMakeFiles/pddrive1.dir
/dcreate_matrix.c.o -o pddrive1 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-d
ist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/lin
ux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib
../SRC/libsuperlu_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp
/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77o
rxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
572 [ 78%] Linking C executable pddrive3
573 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive3.dir/link.txt --verbose=1
574 [ 79%] Linking C executable pddrive2
575 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive2.dir/link.txt --verbose=1
576 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive3.dir/pddrive3.c.o CMakeFiles/pddrive3.dir
/dcreate_matrix.c.o -o pddrive3 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-d
ist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/lin
ux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib
../SRC/libsuperlu_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp
/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77o
rxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
577 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive2.dir/pddrive2.c.o CMakeFiles/pddrive2.dir
/dcreate_matrix.c.o -o pddrive2 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-d
ist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/lin
ux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib
../SRC/libsuperlu_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp
/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77o
rxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
>> 578 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 579 collect2: error: ld returned 1 exit status
>> 580 make[2]: *** [EXAMPLE/CMakeFiles/pddrive.dir/build.make:118: EXAMPLE/pddrive] Error 1
581 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 582 make[1]: *** [CMakeFiles/Makefile2:183: EXAMPLE/CMakeFiles/pddrive.dir/all] Error 2
>> 583 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 584 collect2: error: ld returned 1 exit status
>> 585 make[2]: *** [EXAMPLE/CMakeFiles/pddrive1.dir/build.make:118: EXAMPLE/pddrive1] Error 1
586 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 587 make[1]: *** [CMakeFiles/Makefile2:209: EXAMPLE/CMakeFiles/pddrive1.dir/all] Error 2
>> 588 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 589 collect2: error: ld returned 1 exit status
>> 590 make[2]: *** [EXAMPLE/CMakeFiles/pddrive4.dir/build.make:118: EXAMPLE/pddrive4] Error 1
591 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 592 make[1]: *** [CMakeFiles/Makefile2:287: EXAMPLE/CMakeFiles/pddrive4.dir/all] Error 2
>> 593 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 594 collect2: error: ld returned 1 exit status
>> 595 make[2]: *** [EXAMPLE/CMakeFiles/pddrive2.dir/build.make:118: EXAMPLE/pddrive2] Error 1
596 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 597 make[1]: *** [CMakeFiles/Makefile2:235: EXAMPLE/CMakeFiles/pddrive2.dir/all] Error 2
>> 598 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 599 collect2: error: ld returned 1 exit status
>> 600 make[2]: *** [EXAMPLE/CMakeFiles/pddrive3.dir/build.make:118: EXAMPLE/pddrive3] Error 1
601 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 602 make[1]: *** [CMakeFiles/Makefile2:261: EXAMPLE/CMakeFiles/pddrive3.dir/all] Error 2
603 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 604 make: *** [Makefile:149: all] Error 2docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice trilinos --runner spack --replace trilinos --experiment fortrilinos --outfile /results/fortrilinos/2.0.0/trilinos/experiment.jsonThis is too chonky to build on my laptop.
requires trillinos too, lol
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi --experiment omega-h --outfile /results/omega-h/9.13.13/openmpi/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice pkgconf --runner spack --replace pkgconf --experiment hdf5 --outfile /results/hdf5/1.10.0/pkgconf/experiment.jsonHowever, looks like elfcall can't find:
Cannot find needed library libmpi.so.40And the main (master) branch can't be relocated because it's a longer path.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi@master --runner spack --replace openmpi --experiment openpmd-api --outfile /results/openpmd-api/0.11.1/openmpi/experiment.json
1:BOOL=OFF' '-DopenPMD_USE_ADIOS2:BOOL=ON' '-DopenPMD_USE_PYTHON:BOOL=OFF' '-DBUILD_TESTING:BOOL=OFF' '-DBUILD_EXAMPLES:BOOL=OFF' '-DopenPMD_USE_INTERNAL_JSON:BOOL=OFF' '-DopenPMD_USE_INTERNAL_VARIANT:BOOL=OFF' '/tmp/root/spack-stage/spack-stage-openpmd-api-0.11.1-fhdp7nfpzfaaz52o5ilhk2bgfyvgsvmj/spack-src'
1 error found in build log:
15 -- Found MPI_C: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmi
py3bjhsk5dbioidlwxm2oeyqso4b/lib/libmpi.so (found version "3.1")
16 -- Found MPI_CXX: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cq
mipy3bjhsk5dbioidlwxm2oeyqso4b/lib/libmpi.so (found version "3.1")
17 -- Found MPI: TRUE (found version "3.1")
18 -- Found nlohmann_json: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/nlohmann-j
son-3.10.5-gbep6sj7r6o77skebrmynsdcs35kjx52/lib/cmake/nlohmann_json/nlohmann_jsonConfig.
cmake (found suitable version "3.10.5", minimum required is "3.7.0")
19 -- nlohmann-json: Found version 3.10.5
20 -- Found HDF5: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/hdf5-1.12.2-godyvkc
wlaxwahxwhmsquzba4l5vd6lx/lib/libhdf5.so;/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-
11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/lib/libmpi.so (found suitable vers
ion "1.12.2", minimum required is "1.8.13") found components: C
>> 21 CMake Error at CMakeLists.txt:157 (message):
22 Found MPI but only serial version of HDF5. Either set openPMD_USE_MPI=OFF
23 to disable MPI or set openPMD_USE_HDF5=OFF to disable HDF5 or provide a
24 parallel install of HDF5.
25
26
27 -- Configuring incomplete, errors occurred!docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi@master --runner spack --replace openmpi --experiment superlu-dist --outfile /results/superlu-dist/5.0.0/openmpi/experiment.json
==> [2022-07-28-20:47:45.434983, 11] 11: superlu-dist: Executing phase: 'build'
==> [2022-07-28-20:47:53.543632, 11] WRITE LOCK (spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k): /tmp/root/spack-stage/.lock[6505392650183886231:1] [Released at 20:47:53.543570]
==> [2022-07-28-20:47:53.571369, 1] Error: ProcessError: Command exited with status 2:
'make' '-j8'
33 errors found in build log:
541 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/spack
-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-src/SRC -I/spack/opt/s
pack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xyn
rp/include -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakb
a5dfqwrw3xh7lbb7q7gz77sg/include -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0
-std=c99 -O2 -g -DNDEBUG -MD -MT EXAMPLE/CMakeFiles/pddrive3.dir/dcreate_matrix.c.o -MF
CMakeFiles/pddrive3.dir/dcreate_matrix.c.o.d -o CMakeFiles/pddrive3.dir/dcreate_matrix
.c.o -c /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6
goe72k/spack-src/EXAMPLE/dcreate_matrix.c
542 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive1_ABglobal.dir/link.txt --verbose=1
543 [ 74%] Linking C executable pddrive2_ABglobal
544 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive2_ABglobal.dir/link.txt --verbose=1
545 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive1_ABglobal.dir/pddrive1_ABglobal.c.o -o pd
drive1_ABglobal -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsuperl
u_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4
urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/linux-ubuntu2
2.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparmetis
-L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh
7lbb7q7gz77sg/lib -lmetis
546 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive2_ABglobal.dir/pddrive2_ABglobal.c.o -o pd
drive2_ABglobal -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsuperl
u_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4
urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/linux-ubuntu2
2.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparmetis
-L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh
7lbb7q7gz77sg/lib -lmetis
>> 547 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 548 collect2: error: ld returned 1 exit status
>> 549 make[2]: *** [EXAMPLE/CMakeFiles/pddrive_ABglobal.dir/build.make:102: EXAMPLE/pddrive_A
Bglobal] Error 1
550 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 551 make[1]: *** [CMakeFiles/Makefile2:313: EXAMPLE/CMakeFiles/pddrive_ABglobal.dir/all] Er
ror 2
552 make[1]: *** Waiting for unfinished jobs....
553 [ 75%] Linking C executable pddrive4
554 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive4.dir/link.txt --verbose=1
>> 555 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 556 collect2: error: ld returned 1 exit status
557 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive4.dir/pddrive4.c.o CMakeFiles/pddrive4.dir
/dcreate_matrix.c.o -o pddrive4 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-d
ist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/lin
ux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib
../SRC/libsuperlu_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp
/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77o
rxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
>> 558 make[2]: *** [EXAMPLE/CMakeFiles/pddrive1_ABglobal.dir/build.make:102: EXAMPLE/pddrive1
_ABglobal] Error 1
559 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 560 make[1]: *** [CMakeFiles/Makefile2:339: EXAMPLE/CMakeFiles/pddrive1_ABglobal.dir/all] E
rror 2
561 [ 76%] Linking C executable pddrive
562 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive.dir/link.txt --verbose=1
563 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive.dir/pddrive.c.o CMakeFiles/pddrive.dir/dc
reate_matrix.c.o -o pddrive -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-
5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/linux-u
buntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../S
RC/libsuperlu_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openb
las-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/l
inux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib
-lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxak
ba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
564 [ 77%] Linking C executable pddrive2
565 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive2.dir/link.txt --verbose=1
566 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive2.dir/pddrive2.c.o CMakeFiles/pddrive2.dir
/dcreate_matrix.c.o -o pddrive2 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-d
ist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/lin
ux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib
../SRC/libsuperlu_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp
/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77o
rxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
567 [ 78%] Linking C executable pddrive3
568 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive3.dir/link.txt --verbose=1
>> 569 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 570 collect2: error: ld returned 1 exit status
571 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive3.dir/pddrive3.c.o CMakeFiles/pddrive3.dir
/dcreate_matrix.c.o -o pddrive3 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-d
ist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/lin
ux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib
../SRC/libsuperlu_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp
/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77o
rxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
>> 572 make[2]: *** [EXAMPLE/CMakeFiles/pddrive2_ABglobal.dir/build.make:102: EXAMPLE/pddrive2
_ABglobal] Error 1
573 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 574 make[1]: *** [CMakeFiles/Makefile2:365: EXAMPLE/CMakeFiles/pddrive2_ABglobal.dir/all] E
rror 2
575 [ 79%] Linking C executable pddrive1
576 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72
k/spack-build-thc3swy/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pddrive1.dir/link.txt --verbose=1
577 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioid
lwxm2oeyqso4b/bin/mpicc -DUSE_VENDOR_BLAS -DAdd_ -DDEBUGlevel=0 -DPRNTlevel=0 -std=c99
-O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive1.dir/pddrive1.c.o CMakeFiles/pddrive1.dir
/dcreate_matrix.c.o -o pddrive1 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-d
ist-5.0.0-thc3swy42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy/SRC:/spack/opt/spack/lin
ux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib
../SRC/libsuperlu_dist.so.5.0.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp
/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77o
rxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
>> 578 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 579 collect2: error: ld returned 1 exit status
>> 580 make[2]: *** [EXAMPLE/CMakeFiles/pddrive4.dir/build.make:118: EXAMPLE/pddrive4] Error 1
581 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 582 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 583 make[1]: *** [CMakeFiles/Makefile2:287: EXAMPLE/CMakeFiles/pddrive4.dir/all] Error 2
>> 584 collect2: error: ld returned 1 exit status
>> 585 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 586 make[2]: *** [EXAMPLE/CMakeFiles/pddrive.dir/build.make:118: EXAMPLE/pddrive] Error 1
587 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 588 make[1]: *** [CMakeFiles/Makefile2:183: EXAMPLE/CMakeFiles/pddrive.dir/all] Error 2
>> 589 collect2: error: ld returned 1 exit status
>> 590 make[2]: *** [EXAMPLE/CMakeFiles/pddrive2.dir/build.make:118: EXAMPLE/pddrive2] Error 1
591 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 592 make[1]: *** [CMakeFiles/Makefile2:235: EXAMPLE/CMakeFiles/pddrive2.dir/all] Error 2
>> 593 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 594 collect2: error: ld returned 1 exit status
>> 595 make[2]: *** [EXAMPLE/CMakeFiles/pddrive3.dir/build.make:118: EXAMPLE/pddrive3] Error 1
596 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 597 make[1]: *** [CMakeFiles/Makefile2:261: EXAMPLE/CMakeFiles/pddrive3.dir/all] Error 2
>> 598 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urm
se2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_conc
at_string'
>> 599 collect2: error: ld returned 1 exit status
>> 600 make[2]: *** [EXAMPLE/CMakeFiles/pddrive1.dir/build.make:118: EXAMPLE/pddrive1] Error 1
601 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 602 make[1]: *** [CMakeFiles/Makefile2:209: EXAMPLE/CMakeFiles/pddrive1.dir/all] Error 2
603 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.0.0-thc3sw
y42kbc3jq2hxmxefgvf6goe72k/spack-build-thc3swy'
>> 604 make: *** [Makefile:149: all] Error 2
See build log for details:
yaksa is too big to build, so likely won't work in gh-actions, we could try later.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi@master --experiment heffte --outfile /results/heffte/0.1/openmpi/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice py-numpy --runner spack --replace py-numpy --experiment py-libensemble --outfile /results/py-libensemble/0.1.0/py-numpy/experiment.json
==> [2022-07-28-21:15:00.731337, 1] Creating stage lock spack-stage-py-libensemble-0.1.0-vwee7waskhtn2eozzj2jqwupyje4t43v
Traceback (most recent call last):
File "/usr/local/lib/python3.10/dist-packages/spliced/experiment/spack.py", line 127, in do_install
spec.package.do_install(force=True)
File "/spack/lib/spack/spack/package_base.py", line 1905, in do_install
builder.install()
File "/spack/lib/spack/spack/installer.py", line 1699, in install
self._install_task(task)
File "/spack/lib/spack/spack/installer.py", line 1233, in _install_task
spack.build_environment.start_build_process(
File "/spack/lib/spack/spack/build_environment.py", line 1200, in start_build_process
raise child_result
spack.build_environment.ChildError: OSError: No such file or directory: '/tmp/root/spack-stage/spack-stage-py-libensemble-0.1.0-vwee7waskhtn2eozzj2jqwupyje4t43v/spack-src/examples/calling_scripts/regression_tests'docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice py-mpi4py --runner spack --replace py-mpi4py --experiment py-petsc4py --outfile /results/py-petsc4py/3.10.0/py-mpi4py/experiment.json
==> [2022-07-28-21:16:31.238227, 73] 73: superlu-dist: Executing phase: 'build'
==> [2022-07-28-21:16:45.369010, 73] WRITE LOCK (spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73): /tmp/root/spack-stage/.lock[1936176548018551543:1] [Released at 21:16:45.368965]
==> [2022-07-28-21:16:45.391703, 1] Error: ProcessError: Command exited with status 2:
'make' '-j8'
33 errors found in build log:
934 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/sp
ack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC
-I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg
5x4iik7s4hi6xynrp/include -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/meti
s-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack-stage-s
uperlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/SRC -I/spack/opt/spack/li
nux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/includ
e -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnj
kg5x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -MD -MT EXAMPL
E/CMakeFiles/pddrive2.dir/dcreate_matrix.c.o -MF CMakeFiles/pddrive2.dir/dcreate_matri
x.c.o.d -o CMakeFiles/pddrive2.dir/dcreate_matrix.c.o -c /tmp/root/spack-stage/spack-s
tage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/EXAMPLE/dcreate_mat
rix.c
935 [ 82%] Linking C executable pddrive1_ABglobal
936 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFi
les/pddrive1_ABglobal.dir/link.txt --verbose=1
937 [ 82%] Building C object EXAMPLE/CMakeFiles/pddrive3.dir/dcreate_matrix.c.o
938 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/sp
ack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC
-I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg
5x4iik7s4hi6xynrp/include -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/meti
s-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack-stage-s
uperlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/SRC -I/spack/opt/spack/li
nux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/includ
e -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnj
kg5x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -MD -MT EXAMPL
E/CMakeFiles/pddrive3.dir/dcreate_matrix.c.o -MF CMakeFiles/pddrive3.dir/dcreate_matri
x.c.o.d -o CMakeFiles/pddrive3.dir/dcreate_matrix.c.o -c /tmp/root/spack-stage/spack-s
tage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/EXAMPLE/dcreate_mat
rix.c
939 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioi
dlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis
-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR
_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive1_ABglobal.dir/pddrive1_AB
global.c.o -o pddrive1_ABglobal -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-
dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC:/spack/opt/spack/l
inux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/l
ib ../SRC/libsuperlu_dist.so.5.4.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2
.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/op
t/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi
6xynrp/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.
1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
>> 940 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 941 collect2: error: ld returned 1 exit status
>> 942 make[2]: *** [EXAMPLE/CMakeFiles/pddrive_ABglobal.dir/build.make:102: EXAMPLE/pddrive_
ABglobal] Error 1
943 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
944 [ 82%] Building C object TEST/CMakeFiles/pdtest.dir/dcreate_matrix.c.o
>> 945 make[1]: *** [CMakeFiles/Makefile2:385: EXAMPLE/CMakeFiles/pddrive_ABglobal.dir/all] E
rror 2
946 make[1]: *** Waiting for unfinished jobs....
947 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/TEST && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/spack
-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC -I/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4
iik7s4hi6xynrp/include -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5
.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack-stage-supe
rlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/SRC -I/spack/opt/spack/linux
-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -
I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5
x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -MD -MT TEST/CMak
eFiles/pdtest.dir/dcreate_matrix.c.o -MF CMakeFiles/pdtest.dir/dcreate_matrix.c.o.d -o
CMakeFiles/pdtest.dir/dcreate_matrix.c.o -c /tmp/root/spack-stage/spack-stage-superlu
-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/TEST/dcreate_matrix.c
948 [ 83%] Building C object TEST/CMakeFiles/pdtest.dir/pdcompute_resid.c.o
949 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/TEST && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/o
penmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/spack
-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC -I/
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4
iik7s4hi6xynrp/include -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5
.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack-stage-supe
rlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/SRC -I/spack/opt/spack/linux
-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -
I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5
x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -MD -MT TEST/CMak
eFiles/pdtest.dir/pdcompute_resid.c.o -MF CMakeFiles/pdtest.dir/pdcompute_resid.c.o.d
-o CMakeFiles/pdtest.dir/pdcompute_resid.c.o -c /tmp/root/spack-stage/spack-stage-supe
rlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/TEST/pdcompute_resid.c
>> 950 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 951 collect2: error: ld returned 1 exit status
>> 952 make[2]: *** [EXAMPLE/CMakeFiles/pddrive1_ABglobal.dir/build.make:102: EXAMPLE/pddrive
1_ABglobal] Error 1
953 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 954 make[1]: *** [CMakeFiles/Makefile2:411: EXAMPLE/CMakeFiles/pddrive1_ABglobal.dir/all]
Error 2
955 [ 83%] Building C object EXAMPLE/CMakeFiles/pddrive2.dir/dcreate_matrix_perturbed.c.o
956 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/sp
ack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC
-I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg
5x4iik7s4hi6xynrp/include -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/meti
s-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack-stage-s
uperlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-src/SRC -I/spack/opt/spack/li
nux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/includ
e -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnj
kg5x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -MD -MT EXAMPL
E/CMakeFiles/pddrive2.dir/dcreate_matrix_perturbed.c.o -MF CMakeFiles/pddrive2.dir/dcr
eate_matrix_perturbed.c.o.d -o CMakeFiles/pddrive2.dir/dcreate_matrix_perturbed.c.o -c
/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73
/spack-src/EXAMPLE/dcreate_matrix_perturbed.c
957 [ 84%] Linking C executable pddrive4
958 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFi
les/pddrive4.dir/link.txt --verbose=1
959 [ 84%] Linking C executable pddrive1
960 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFi
les/pddrive1.dir/link.txt --verbose=1
...
965 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioi
dlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis
-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR
_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive.dir/pddrive.c.o CMakeFile
s/pddrive.dir/dcreate_matrix.c.o -o pddrive -Wl,-rpath,/tmp/root/spack-stage/spack-st
age-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC:/spack
/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax
4jlr5yqgc4/lib ../SRC/libsuperlu_dist.so.5.4.0 /spack/opt/spack/linux-ubuntu22.04-skyl
ake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm
-L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjk
g5x4iik7s4hi6xynrp/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.
2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
966 [ 86%] Linking C executable pddrive3
967 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFi
les/pddrive3.dir/link.txt --verbose=1
968 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioi
dlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis
-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR
_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive3.dir/pddrive3.c.o CMakeFi
les/pddrive3.dir/dcreate_matrix.c.o -o pddrive3 -Wl,-rpath,/tmp/root/spack-stage/spac
k-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC:/s
pack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuq
vsax4jlr5yqgc4/lib ../SRC/libsuperlu_dist.so.5.4.0 /spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so
-lm -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3
lnjkg5x4iik7s4hi6xynrp/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc
-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
969 [ 86%] Linking C executable pdtest
970 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/TEST && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/c
make-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles
/pdtest.dir/link.txt --verbose=1
>> 971 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
972 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioi
dlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis
-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR
_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles/pdtest.dir/pdtest.c.o CMakeFiles/
pdtest.dir/dcreate_matrix.c.o CMakeFiles/pdtest.dir/pdcompute_resid.c.o -o pdtest -Wl
,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjj
w3wdb73/spack-build-atky62e/SRC:/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/
openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsuperlu_dist.so.5.4.0 /
spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihu
qvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/linux-ubuntu22.04-skylake/gc
c-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparmetis -L/spack/opt/s
pack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg
/lib -lmetis
>> 973 collect2: error: ld returned 1 exit status
>> 974 make[2]: *** [EXAMPLE/CMakeFiles/pddrive4.dir/build.make:118: EXAMPLE/pddrive4] Error
1
975 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 976 make[1]: *** [CMakeFiles/Makefile2:359: EXAMPLE/CMakeFiles/pddrive4.dir/all] Error 2
>> 977 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 978 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 979 collect2: error: ld returned 1 exit status
>> 980 make[2]: *** [EXAMPLE/CMakeFiles/pddrive1.dir/build.make:118: EXAMPLE/pddrive1] Error
1
981 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 982 make[1]: *** [CMakeFiles/Makefile2:281: EXAMPLE/CMakeFiles/pddrive1.dir/all] Error 2
>> 983 collect2: error: ld returned 1 exit status
>> 984 make[2]: *** [EXAMPLE/CMakeFiles/pddrive.dir/build.make:118: EXAMPLE/pddrive] Error 1
985 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 986 make[1]: *** [CMakeFiles/Makefile2:255: EXAMPLE/CMakeFiles/pddrive.dir/all] Error 2
>> 987 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 988 collect2: error: ld returned 1 exit status
>> 989 make[2]: *** [EXAMPLE/CMakeFiles/pddrive3.dir/build.make:118: EXAMPLE/pddrive3] Error
1
990 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 991 make[1]: *** [CMakeFiles/Makefile2:333: EXAMPLE/CMakeFiles/pddrive3.dir/all] Error 2
992 [ 87%] Linking C executable pddrive2
993 cd /tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62eev3jnculrxgo2mrgjjw3wdb
73/spack-build-atky62e/EXAMPLE && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.
0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFi
les/pddrive2.dir/link.txt --verbose=1
994 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioi
dlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis
-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR
_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles/pddrive2.dir/pddrive2.c.o CMakeFi
les/pddrive2.dir/dcreate_matrix.c.o CMakeFiles/pddrive2.dir/dcreate_matrix_perturbed.c
.o -o pddrive2 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky62
eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e/SRC:/spack/opt/spack/linux-ubuntu22.04-
skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsupe
rlu_dist.so.5.4.0 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.2
0-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/linux-ubu
ntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparm
etis -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfq
wrw3xh7lbb7q7gz77sg/lib -lmetis
>> 995 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 996 collect2: error: ld returned 1 exit status
>> 997 make[2]: *** [TEST/CMakeFiles/pdtest.dir/build.make:134: TEST/pdtest] Error 1
998 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 999 make[1]: *** [CMakeFiles/Makefile2:229: TEST/CMakeFiles/pdtest.dir/all] Error 2
>> 1000 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so: undefined reference to `_gfortran_co
ncat_string'
>> 1001 collect2: error: ld returned 1 exit status
>> 1002 make[2]: *** [EXAMPLE/CMakeFiles/pddrive2.dir/build.make:134: EXAMPLE/pddrive2] Error
1
1003 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 1004 make[1]: *** [CMakeFiles/Makefile2:307: EXAMPLE/CMakeFiles/pddrive2.dir/all] Error 2
1005 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-superlu-dist-5.4.0-atky6
2eev3jnculrxgo2mrgjjw3wdb73/spack-build-atky62e'
>> 1006 make: *** [Makefile:149: all] Error 2
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi@master --runner spack --replace openmpi --experiment parsec --outfile /results/parsec/1.1.0/openmpi/experiment.json
EC_DEBUG_HISTORY:BOOL=OFF' '-DPARSEC_DEBUG_PARANOID:BOOL=OFF' '/tmp/root/spack-stage/spack-stage-parsec-1.1.0-ucbyzk7c3mi6rhwueo37qgqwhujeregn/spack-src'
1 error found in build log:
142 -- Could NOT find Omega; Options depending on Omega will be disabled
143 if needed, please specify the library location
144 - using OMEGA_DIR []
145 - or a combination of OMEGA_INCLUDE_DIR [OMEGA_INCLUDE_DIR-NOTFOUND] and OMEGA_LIBR
ARY [OMEGA_LIBRARY-NOTFOUND] (missing: OMEGA_INCLUDE_DIR OMEGA_LIBRARY)
146 -- Generate precision dependencies in /tmp/root/spack-stage/spack-stage-parsec-1.1.0-uc
byzk7c3mi6rhwueo37qgqwhujeregn/spack-src/data_dist/matrix
147 -- Generate precision dependencies in /tmp/root/spack-stage/spack-stage-parsec-1.1.0-uc
byzk7c3mi6rhwueo37qgqwhujeregn/spack-src/data_dist/matrix - Done
>> 148 CMake Error at cmake_modules/FindCOREBLAS.cmake:109 (else):
149 Flow control statements are not properly nested.
150 Call Stack (most recent call first):
151 dplasma/CMakeLists.txt:25 (find_package)
152
153
154 CMake Warning at dplasma/CMakeLists.txt:25 (find_package):docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice blt@master --runner spack --replace blt --experiment raja --outfile /results/raja/0.10.0/blt/experiment.jsonyay!
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice papi@master --runner spack --replace papi --experiment caliper --outfile /results/caliper/1.7.0/papi/experiment.json
==> [2022-07-28-21:44:30.787085, 3136] WRITE LOCK (spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c): /tmp/root/spack-stage/.lock[2044469360343817241:1] [Released at 21:44:30.787040]
==> [2022-07-28-21:44:30.802841, 1] Error: ProcessError: Command exited with status 2:
'make' '-j8'
5 errors found in build log:
369 [ 37%] Built target caliper-sampler
370 [ 37%] Building CXX object mpi/mpi-rt/services/mpiwrap/CMakeFiles/caliper-mpiwrap.dir/M
piWrap.cpp.o
371 cd /tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spa
ck-build-jruzdqi/mpi/mpi-rt/services/mpiwrap && /spack/lib/spack/env/gcc/g++ -I/tmp/ro
ot/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spack-build-j
ruzdqi/include -I/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajm
ctuzhhai2c/spack-src/include -I/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6
t2yiadasqbpajmctuzhhai2c/spack-src/mpi/include -I/spack/opt/spack/linux-ubuntu22.04-sky
lake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/include -I/tmp/root/spac
k-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spack-src/mpi/mpi-rt
-I/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spa
ck-build-jruzdqi/ext/gotcha/gotcha-download/gotcha-src/include -O2 -g -DNDEBUG -fPIC -s
td=gnu++11 -MD -MT mpi/mpi-rt/services/mpiwrap/CMakeFiles/caliper-mpiwrap.dir/MpiWrap.c
pp.o -MF CMakeFiles/caliper-mpiwrap.dir/MpiWrap.cpp.o.d -o CMakeFiles/caliper-mpiwrap.d
ir/MpiWrap.cpp.o -c /tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbp
ajmctuzhhai2c/spack-src/mpi/mpi-rt/services/mpiwrap/MpiWrap.cpp
372 [ 37%] Linking C executable autotee_test
373 cd /tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spa
ck-build-jruzdqi/ext/gotcha/gotcha-download/gotcha-build/src/example/autotee && /spack/
opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/cmake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r
5pc5m/bin/cmake -E cmake_link_script CMakeFiles/autotee_test.dir/link.txt --verbose=1
374 /spack/lib/spack/env/gcc/gcc -O2 -g -DNDEBUG -rdynamic CMakeFiles/autotee_test.dir/test
_autotee.c.o -o autotee_test -Wl,-rpath,/tmp/root/spack-stage/spack-stage-caliper-1.7.
0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spack-build-jruzdqi/ext/gotcha/gotcha-download/gotch
a-build/src/example/autotee:/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2y
iadasqbpajmctuzhhai2c/spack-build-jruzdqi/ext/gotcha/gotcha-download/gotcha-build/src l
ibautotee.so ../../libgotcha.so.1.0.1
>> 375 /usr/bin/ld: ../../libgotcha.so.1.0.1: undefined reference to `_dl_sym'
>> 376 collect2: error: ld returned 1 exit status
>> 377 make[2]: *** [ext/gotcha/gotcha-download/gotcha-build/src/example/autotee/CMakeFiles/au
totee_test.dir/build.make:102: ext/gotcha/gotcha-download/gotcha-build/src/example/auto
tee/autotee_test] Error 1
378 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2y
iadasqbpajmctuzhhai2c/spack-build-jruzdqi'
>> 379 make[1]: *** [CMakeFiles/Makefile2:1012: ext/gotcha/gotcha-download/gotcha-build/src/ex
ample/autotee/CMakeFiles/autotee_test.dir/all] Error 2
380 make[1]: *** Waiting for unfinished jobs....
381 [ 37%] Building CXX object src/services/CMakeFiles/caliper-services.dir/env/Environment
Info.cpp.o
382 cd /tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spa
ck-build-jruzdqi/src/services && /spack/lib/spack/env/gcc/g++ -I/tmp/root/spack-stage/
spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spack-build-jruzdqi/include
-I/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spac
k-src/include -I/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmc
tuzhhai2c/spack-build-jruzdqi -I/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi
6t2yiadasqbpajmctuzhhai2c/spack-src/src -I/tmp/root/spack-stage/spack-stage-caliper-1.7
.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spack-build-jruzdqi/src/services -O2 -g -DNDEBUG -f
PIC -std=gnu++11 -MD -MT src/services/CMakeFiles/caliper-services.dir/env/EnvironmentIn
fo.cpp.o -MF CMakeFiles/caliper-services.dir/env/EnvironmentInfo.cpp.o.d -o CMakeFiles/
caliper-services.dir/env/EnvironmentInfo.cpp.o -c /tmp/root/spack-stage/spack-stage-cal
iper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spack-src/src/services/env/EnvironmentInfo.
cpp
383 [ 38%] Building CXX object src/common/CMakeFiles/caliper-common.dir/CaliperMetadataAcce
ssInterface.cpp.o
384 cd /tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spa
ck-build-jruzdqi/src/common && /spack/lib/spack/env/gcc/g++ -Dcaliper_common_EXPORTS -I
/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spack-
build-jruzdqi/include -I/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiada
sqbpajmctuzhhai2c/spack-src/include -I/tmp/root/spack-stage/spack-stage-caliper-1.7.0-j
ruzdqi6t2yiadasqbpajmctuzhhai2c/spack-build-jruzdqi -I/tmp/root/spack-stage/spack-stage
-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spack-src/src -O2 -g -DNDEBUG -fPIC -st
d=gnu++11 -MD -MT src/common/CMakeFiles/caliper-common.dir/CaliperMetadataAccessInterfa
ce.cpp.o -MF CMakeFiles/caliper-common.dir/CaliperMetadataAccessInterface.cpp.o.d -o CM
akeFiles/caliper-common.dir/CaliperMetadataAccessInterface.cpp.o -c /tmp/root/spack-sta
ge/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spack-src/src/common/Cali
perMetadataAccessInterface.cpp
385 [ 40%] Building CXX object mpi/mpi-rt/services/mpiwrap/CMakeFiles/caliper-mpiwrap.dir/W
rapper.cpp.o
...
677 cd /tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spa
ck-build-jruzdqi/src/common && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/cm
ake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles/c
aliper-common.dir/link.txt --verbose=1
678 /spack/lib/spack/env/gcc/g++ -fPIC -O2 -g -DNDEBUG -shared -Wl,-soname,libcaliper-commo
n.so.1 -o libcaliper-common.so.1.7.0 "CMakeFiles/caliper-common.dir/Attribute.cpp.o" "C
MakeFiles/caliper-common.dir/CaliperMetadataAccessInterface.cpp.o" "CMakeFiles/caliper-
common.dir/CompressedSnapshotRecord.cpp.o" "CMakeFiles/caliper-common.dir/ContextRecord
.cpp.o" "CMakeFiles/caliper-common.dir/Entry.cpp.o" "CMakeFiles/caliper-common.dir/Log.
cpp.o" "CMakeFiles/caliper-common.dir/Node.cpp.o" "CMakeFiles/caliper-common.dir/NodeBu
ffer.cpp.o" "CMakeFiles/caliper-common.dir/OutputStream.cpp.o" "CMakeFiles/caliper-comm
on.dir/RecordMap.cpp.o" "CMakeFiles/caliper-common.dir/RuntimeConfig.cpp.o" "CMakeFiles
/caliper-common.dir/SnapshotBuffer.cpp.o" "CMakeFiles/caliper-common.dir/SnapshotTextFo
rmatter.cpp.o" "CMakeFiles/caliper-common.dir/StringConverter.cpp.o" "CMakeFiles/calipe
r-common.dir/Variant.cpp.o" "CMakeFiles/caliper-common.dir/cali_types.c.o" "CMakeFiles/
caliper-common.dir/cali_variant.c.o" "csv/CMakeFiles/caliper-csv.dir/CsvReader.cpp.o" "
csv/CMakeFiles/caliper-csv.dir/CsvSpec.cpp.o" "csv/CMakeFiles/caliper-csv.dir/CsvWriter
.cpp.o" "c-util/CMakeFiles/c-util.dir/unitfmt.c.o" "c-util/CMakeFiles/c-util.dir/vlenc.
c.o" util/CMakeFiles/util.dir/parse_util.cpp.o -Wl,-rpath,::::::::::::::::::::::::::::
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
679 cd /tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2yiadasqbpajmctuzhhai2c/spa
ck-build-jruzdqi/src/common && /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/cm
ake-3.23.2-pmpcgqf26kzzlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_symlink_library libcalip
er-common.so.1.7.0 libcaliper-common.so.1 libcaliper-common.so
680 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2y
iadasqbpajmctuzhhai2c/spack-build-jruzdqi'
681 [ 64%] Built target caliper-common
682 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-caliper-1.7.0-jruzdqi6t2y
iadasqbpajmctuzhhai2c/spack-build-jruzdqi'
>> 683 make: *** [Makefile:139: all] Error 2
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice py-jsonschema --runner spack --replace py-jsonschema --experiment nrm --outfile /results/nrm/0.1.0/py-jsonschema/experiment.jsonnrm build failed (can't find obvious traceback).
Splice failed, but other variants might work (should try)
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice [email protected] --runner spack --replace python --experiment upcxx --outfile /results/upcxx/2020.10.0/python/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi --experiment arborx --outfile /results/arborx/1.0/openmpi/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice cmake --runner spack --replace cmake --experiment ginkgo --outfile /results/ginkgo/1.0.0/cmake/experiment.jsonIt took too long to run with cmake so we should test it.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice zlib --runner spack --replace zlib --experiment legion --outfile /results/legion/21.03.0/zlib/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice py-certipy --runner spack --replace py-certipy --experiment py-jupyterhub --outfile /results/py-jupyterhub/0.9.4/py-certipy/experiment.jsonDon't have terminal, mine crashed when I was scrolling up, but the base install definitely failed! (I saw the message at the bottom).
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice argobots --runner spack --replace argobots --experiment bolt --outfile /results/bolt/1.0/argobots/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice numactl --runner spack --replace numactl --experiment aml --outfile /results/aml/0.1.0/numactl/experiment.json
161 checking numa.h presence... yes
162 checking for numa.h... yes
163 checking numaif.h usability... yes
164 checking numaif.h presence... yes
165 checking for numaif.h... yes
166 checking for mbind in -lnuma... yes
>> 167 /tmp/root/spack-stage/spack-stage-aml-master-fyq7osgx6tqvk6gre5jq3x
abtbqqdwac/spack-src/configure: line 15056: syntax error near unexp
ected token `HWLOC,hwloc'
168 /tmp/root/spack-stage/spack-stage-aml-master-fyq7osgx6tqvk6gre5jq3x
abtbqqdwac/spack-src/configure: line 15056: `PKG_HAVE_WITH_MODULES(
HWLOC,hwloc >= 2.1,,)'This failed for both versions of numactl ref.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice pkgconf --runner spack --replace [email protected] --experiment openmpi --outfile /results/openmpi/1.0/pkgconf/experiment.json
...
>> 16843 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (LOGICAL(16)/LOGICAL(1)).
16844 mpi_bsend_init_f90.f90:807:22:
16845
16846 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16847 | 2
16848 ......
16849 807 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16850 | 1
>> 16851 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (INTEGER(1)/LOGICAL(1)).
16852 mpi_bsend_init_f90.f90:822:22:
16853
16854 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16855 | 2
16856 ......
16857 822 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16858 | 1
>> 16859 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (INTEGER(2)/LOGICAL(1)).
16860 mpi_bsend_init_f90.f90:837:22:
16861
16862 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16863 | 2
16864 ......
16865 837 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16866 | 1
>> 16867 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (INTEGER(4)/LOGICAL(1)).
16868 mpi_bsend_init_f90.f90:852:22:
16869
16870 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16871 | 2
16872 ......
16873 852 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16874 | 1
>> 16875 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (INTEGER(8)/LOGICAL(1)).
16876 mpi_bsend_init_f90.f90:867:22:
16877
16878 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16879 | 2
16880 ......
16881 867 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16882 | 1
>> 16883 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (INTEGER(16)/LOGICAL(1)).
16884 mpi_bsend_init_f90.f90:882:22:
16885
16886 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16887 | 2
16888 ......
16889 882 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16890 | 1
>> 16891 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (REAL(4)/LOGICAL(1)).
16892 mpi_bsend_init_f90.f90:897:22:
16893
16894 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16895 | 2
16896 ......
16897 897 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16898 | 1
>> 16899 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (REAL(8)/LOGICAL(1)).
16900 mpi_bsend_init_f90.f90:912:22:
16901
16902 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16903 | 2
16904 ......
16905 912 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16906 | 1
>> 16907 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (REAL(16)/LOGICAL(1)).
16908 mpi_bsend_init_f90.f90:927:22:
16909
16910 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16911 | 2
16912 ......
16913 927 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16914 | 1
>> 16915 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (COMPLEX(4)/LOGICAL(1)).
16916 mpi_bsend_init_f90.f90:942:22:
16917
16918 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16919 | 2
16920 ......
16921 942 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16922 | 1
>> 16923 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (COMPLEX(8)/LOGICAL(1)).
16924 mpi_bsend_init_f90.f90:957:22:
16925
16926 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16927 | 2
16928 ......
16929 957 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16930 | 1
>> 16931 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (COMPLEX(16)/LOGICAL(1)).
16932 mpi_bsend_init_f90.f90:972:22:
16933
16934 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16935 | 2
16936 ......
16937 972 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16938 | 1
>> 16939 Error: Rank mismatch between actual argument at (1) and actual ar
gument at (2) (scalar and rank-4)
16940 mpi_bsend_init_f90.f90:987:22:
16941
16942 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16943 | 2
16944 ......
16945 987 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16946 | 1
>> 16947 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (LOGICAL(2)/LOGICAL(1)).
16948 mpi_bsend_init_f90.f90:1002:22:
16949
16950 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16951 | 2
16952 ......
16953 1002 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16954 | 1
>> 16955 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (LOGICAL(4)/LOGICAL(1)).
16956 mpi_bsend_init_f90.f90:1017:22:
16957
16958 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16959 | 2
16960 ......
16961 1017 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16962 | 1
>> 16963 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (LOGICAL(8)/LOGICAL(1)).
16964 mpi_bsend_init_f90.f90:1032:22:
16965
16966 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16967 | 2
16968 ......
16969 1032 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16970 | 1
>> 16971 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (LOGICAL(16)/LOGICAL(1)).
16972 mpi_bsend_init_f90.f90:1047:22:
16973
16974 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16975 | 2
16976 ......
16977 1047 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16978 | 1
>> 16979 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (INTEGER(1)/LOGICAL(1)).
16980 mpi_bsend_init_f90.f90:1062:22:
16981
16982 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16983 | 2
16984 ......
16985 1062 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16986 | 1
>> 16987 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (INTEGER(2)/LOGICAL(1)).
16988 mpi_bsend_init_f90.f90:1077:22:
16989
16990 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16991 | 2
16992 ......
16993 1077 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16994 | 1
>> 16995 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (INTEGER(4)/LOGICAL(1)).
16996 mpi_bsend_init_f90.f90:1092:22:
16997
16998 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
16999 | 2
17000 ......
17001 1092 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17002 | 1
>> 17003 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (INTEGER(8)/LOGICAL(1)).
17004 mpi_bsend_init_f90.f90:1107:22:
17005
17006 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17007 | 2
17008 ......
17009 1107 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17010 | 1
>> 17011 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (INTEGER(16)/LOGICAL(1)).
17012 mpi_bsend_init_f90.f90:1122:22:
17013
17014 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17015 | 2
17016 ......
17017 1122 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17018 | 1
>> 17019 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (REAL(4)/LOGICAL(1)).
17020 mpi_bsend_init_f90.f90:1137:22:
17021
17022 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17023 | 2
17024 ......
17025 1137 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17026 | 1
>> 17027 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (REAL(8)/LOGICAL(1)).
17028 mpi_bsend_init_f90.f90:1152:22:
17029
17030 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17031 | 2
17032 ......
17033 1152 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17034 | 1
>> 17035 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (REAL(16)/LOGICAL(1)).
17036 mpi_bsend_init_f90.f90:1167:22:
17037
17038 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17039 | 2
17040 ......
17041 1167 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17042 | 1
>> 17043 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (COMPLEX(4)/LOGICAL(1)).
17044 mpi_bsend_init_f90.f90:1182:22:
17045
17046 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17047 | 2
17048 ......
17049 1182 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17050 | 1
>> 17051 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (COMPLEX(8)/LOGICAL(1)).
17052 mpi_bsend_init_f90.f90:1197:22:
17053
17054 12 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17055 | 2
17056 ......
17057 1197 | call MPI_Bsend_init(buf, count, datatype, dest, tag, &
17058 | 1
>> 17059 Error: Type mismatch between actual argument at (1) and actual ar
gument at (2) (COMPLEX(16)/LOGICAL(1)).
>> 17060 make[5]: *** [Makefile:1346: mpi_bsend_init_f90.o] Error 1
17061 Finished generating Fortran 90 interface functions
17062 make[5]: Leaving directory '/tmp/root/spack-stage/spack-stage-ope
nmpi-1.0-k7nwdvhnw7bfh4kgsljqu2rrjxi3ovru/spack-src/ompi/mpi/f90'
>> 17063 make[4]: *** [Makefile:1065: all-recursive] Error 1
17064 make[4]: Leaving directory '/tmp/root/spack-stage/spack-stage-ope
nmpi-1.0-k7nwdvhnw7bfh4kgsljqu2rrjxi3ovru/spack-src/ompi/mpi/f90'
>> 17065 make[3]: *** [Makefile:971: all] Error 2
17066 make[3]: Leaving directory '/tmp/root/spack-stage/spack-stage-ope
nmpi-1.0-k7nwdvhnw7bfh4kgsljqu2rrjxi3ovru/spack-src/ompi/mpi/f90'
>> 17067 make[2]: *** [Makefile:843: all-recursive] Error 1
17068 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-ope
nmpi-1.0-k7nwdvhnw7bfh4kgsljqu2rrjxi3ovru/spack-src/ompi/mpi'
>> 17069 make[1]: *** [Makefile:1022: all-recursive] Error 1
17070 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-ope
nmpi-1.0-k7nwdvhnw7bfh4kgsljqu2rrjxi3ovru/spack-src/ompi'
>> 17071 make: *** [Makefile:864: all-recursive] Error 1
...If openmpi (above) doesn't work, this won't either
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi --experiment parallel-netcdf --outfile /results/parallel-netcdf/1.10.0/openmpi/experiment.jsonI think it installed but I missed the success message (it was streaming too fast) so I'm going to run it.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openblas --runner spack --replace openblas --experiment superlu --outfile /results/superlu/5.2.1/openblas/experiment.jsonRequires openmpi, won't work
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi --experiment mfem --outfile /results/mfem/3.1/openmpi/experiment.jsonRequires openmpi, won't work
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi --experiment hypre --outfile /results/hypre/2.10.0b/openmpi/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice zlib --runner spack --replace zlib --experiment darshan-util --outfile /results/darshan-util/3.0.0/zlib/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice petsc --runner spack --replace [email protected] --experiment slepc --outfile /results/slepc/3.10.0/petsc/experiment.json
==> [2022-07-29-02:16:04.498408, 3688] 3688: superlu-dist: Executing phase: 'cmake'
==> [2022-07-29-02:16:06.561519, 3688] 3688: superlu-dist: Executing phase: 'build'
==> [2022-07-29-02:16:25.073894, 3688] WRITE LOCK (spack-stage-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa): /tmp/root/spack-stage/.lock[3701324042554369262:1] [Released at 02:16:25.073850]
==> [2022-07-29-02:16:25.097558, 1] Error: ProcessError: Command exited with status 2:
'make' '-j8'
21 errors found in build log:
1100 cd /tmp/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatk
lrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud/EXAMPLE && /spack/opt/s
pack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjh
sk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/spack-st
age-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-buil
d-k7rciud/SRC -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.
2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -I/spa
ck/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77or
xakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack
-stage-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-s
rc/SRC -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/met
is-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3l
njkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -
DNDEBUG -fPIE -MD -MT EXAMPLE/CMakeFiles/pddrive2.dir/pddrive2.c.o
-MF CMakeFiles/pddrive2.dir/pddrive2.c.o.d -o CMakeFiles/pddrive2
.dir/pddrive2.c.o -c /tmp/root/spack-stage/spack-stage-superlu-dis
t-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-src/EXAMPLE/pddrive
2.c
1101 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.
4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/li
nux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh
7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-skylake
/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/includ
e -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles
/pdtest.dir/pdtest.c.o CMakeFiles/pdtest.dir/dcreate_matrix.c.o CM
akeFiles/pdtest.dir/pdcompute_resid.c.o -o pdtest -Wl,-rpath,/tmp
/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatklrjnl2x
laxa4l3jk4b2jxa/spack-build-k7rciud/SRC:/spack/opt/spack/linux-ubu
ntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsihuqvsax
4jlr5yqgc4/lib ../SRC/libsuperlu_dist.so.6.1.1 /spack/opt/spack/li
nux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4urmse2d27wawsi
huqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spack/opt/spack/linux-
ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4ii
k7s4hi6xynrp/lib -lparmetis -L/spack/opt/spack/linux-ubuntu22.04-s
kylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/lib
-lmetis
1102 [ 80%] Building C object EXAMPLE/CMakeFiles/pddrive1.dir/dcreate_m
atrix.c.o
1103 cd /tmp/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatk
lrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud/EXAMPLE && /spack/opt/s
pack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjh
sk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/spack-st
age-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-buil
d-k7rciud/SRC -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.
2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -I/spa
ck/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77or
xakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack
-stage-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-s
rc/SRC -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/met
is-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3l
njkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -
DNDEBUG -fPIE -MD -MT EXAMPLE/CMakeFiles/pddrive1.dir/dcreate_matr
ix.c.o -MF CMakeFiles/pddrive1.dir/dcreate_matrix.c.o.d -o CMakeFi
les/pddrive1.dir/dcreate_matrix.c.o -c /tmp/root/spack-stage/spack
-stage-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-s
rc/EXAMPLE/dcreate_matrix.c
1104 [ 81%] Building C object EXAMPLE/CMakeFiles/pddrive2.dir/dcreate_m
atrix.c.o
1105 cd /tmp/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatk
lrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud/EXAMPLE && /spack/opt/s
pack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjh
sk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/spack-st
age-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-buil
d-k7rciud/SRC -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.
2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -I/spa
ck/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77or
xakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack
-stage-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-s
rc/SRC -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/met
is-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3l
njkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -
DNDEBUG -fPIE -MD -MT EXAMPLE/CMakeFiles/pddrive2.dir/dcreate_matr
ix.c.o -MF CMakeFiles/pddrive2.dir/dcreate_matrix.c.o.d -o CMakeFi
les/pddrive2.dir/dcreate_matrix.c.o -c /tmp/root/spack-stage/spack
-stage-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-s
rc/EXAMPLE/dcreate_matrix.c
>> 1106 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0
/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.
so: undefined reference to `_gfortran_concat_string'
1107 [ 81%] Building C object EXAMPLE/CMakeFiles/pddrive2.dir/dcreate_m
atrix_perturbed.c.o
>> 1108 collect2: error: ld returned 1 exit status
>> 1109 make[2]: *** [TEST/CMakeFiles/pdtest.dir/build.make:134: TEST/pdte
st] Error 1
1110 cd /tmp/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatk
lrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud/EXAMPLE && /spack/opt/s
pack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.4-cqmipy3bjh
sk5dbioidlwxm2oeyqso4b/bin/mpicc -I/tmp/root/spack-stage/spack-st
age-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-buil
d-k7rciud/SRC -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.
2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/include -I/spa
ck/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77or
xakba5dfqwrw3xh7lbb7q7gz77sg/include -I/tmp/root/spack-stage/spack
-stage-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-s
rc/SRC -I/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/met
is-5.1.0-77orxakba5dfqwrw3xh7lbb7q7gz77sg/include -I/spack/opt/spa
ck/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3l
njkg5x4iik7s4hi6xynrp/include -DUSE_VENDOR_BLAS -std=c99 -O2 -g -
DNDEBUG -fPIE -MD -MT EXAMPLE/CMakeFiles/pddrive2.dir/dcreate_matr
ix_perturbed.c.o -MF CMakeFiles/pddrive2.dir/dcreate_matrix_pertur
bed.c.o.d -o CMakeFiles/pddrive2.dir/dcreate_matrix_perturbed.c.o
-c /tmp/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatk
lrjnl2xlaxa4l3jk4b2jxa/spack-src/EXAMPLE/dcreate_matrix_perturbed.
c
1111 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-supe
rlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciu
d'
1112 make -f EXAMPLE/CMakeFiles/pddrive3.dir/build.make EXAMPLE/CMakeF
iles/pddrive3.dir/depend
>> 1113 make[1]: *** [CMakeFiles/Makefile2:229: TEST/CMakeFiles/pdtest.dir
/all] Error 2
1114 make[1]: *** Waiting for unfinished jobs....
1115 make[2]: Entering directory '/tmp/root/spack-stage/spack-stage-sup
erlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rci
ud'
1116 cd /tmp/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatk
lrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud && /spack/opt/spack/lin
ux-ubuntu22.04-skylake/gcc-11.2.0/cmake-3.23.2-pmpcgqf26kzzlogzxqh
l47wva5r5pc5m/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/roo
t/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa
4l3jk4b2jxa/spack-src /tmp/root/spack-stage/spack-stage-superlu-di
st-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-src/EXAMPLE /tmp/r
oot/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatklrjnl2xla
xa4l3jk4b2jxa/spack-build-k7rciud /tmp/root/spack-stage/spack-stag
e-superlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-
k7rciud/EXAMPLE /tmp/root/spack-stage/spack-stage-superlu-dist-6.1
.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud/EXAMPLE/CM
akeFiles/pddrive3.dir/DependInfo.cmake --color=
1117 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-supe
rlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciu
d'
1118 make -f EXAMPLE/CMakeFiles/pddrive3.dir/build.make EXAMPLE/CMakeF
iles/pddrive3.dir/build
1119 make[2]: Entering directory '/tmp/root/spack-stage/spack-stage-sup
erlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rci
ud'
...
1129 [ 84%] Linking C executable pddrive1
1130 cd /tmp/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatk
lrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud/EXAMPLE && /spack/opt/s
pack/linux-ubuntu22.04-skylake/gcc-11.2.0/cmake-3.23.2-pmpcgqf26kz
zlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles/pd
drive1.dir/link.txt --verbose=1
1131 cd /tmp/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatk
lrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud/SRC && /spack/opt/spack
/linux-ubuntu22.04-skylake/gcc-11.2.0/cmake-3.23.2-pmpcgqf26kzzlog
zxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles/superl
u_dist-static.dir/link.txt --verbose=1
1132 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.
4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/li
nux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh
7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-skylake
/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/includ
e -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles
/pddrive1.dir/pddrive1.c.o CMakeFiles/pddrive1.dir/dcreate_matrix.
c.o -o pddrive1 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-supe
rlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciu
d/SRC:/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openbl
as-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsuperlu_d
ist.so.6.1.1 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0
/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.
so -lm -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/par
metis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparmetis -L/spa
ck/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77or
xakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
1133 /usr/bin/ar qc libsuperlu_dist.a "CMakeFiles/superlu_dist-static.d
ir/TreeInterface.cpp.o" "CMakeFiles/superlu_dist-static.dir/sp_ien
v.c.o" "CMakeFiles/superlu_dist-static.dir/etree.c.o" "CMakeFiles/
superlu_dist-static.dir/sp_colorder.c.o" "CMakeFiles/superlu_dist-
static.dir/get_perm_c.c.o" "CMakeFiles/superlu_dist-static.dir/mmd
.c.o" "CMakeFiles/superlu_dist-static.dir/comm.c.o" "CMakeFiles/su
perlu_dist-static.dir/memory.c.o" "CMakeFiles/superlu_dist-static.
dir/util.c.o" "CMakeFiles/superlu_dist-static.dir/superlu_grid.c.o
" "CMakeFiles/superlu_dist-static.dir/pxerr_dist.c.o" "CMakeFiles/
superlu_dist-static.dir/superlu_timer.c.o" "CMakeFiles/superlu_dis
t-static.dir/symbfact.c.o" "CMakeFiles/superlu_dist-static.dir/psy
mbfact.c.o" "CMakeFiles/superlu_dist-static.dir/psymbfact_util.c.o
" "CMakeFiles/superlu_dist-static.dir/get_perm_c_parmetis.c.o" "CM
akeFiles/superlu_dist-static.dir/mc64ad_dist.c.o" "CMakeFiles/supe
rlu_dist-static.dir/static_schedule.c.o" "CMakeFiles/superlu_dist-
static.dir/xerr_dist.c.o" "CMakeFiles/superlu_dist-static.dir/smac
h_dist.c.o" "CMakeFiles/superlu_dist-static.dir/dmach_dist.c.o" "C
MakeFiles/superlu_dist-static.dir/colamd.c.o" "CMakeFiles/superlu_
dist-static.dir/superlu_dist_version.c.o" "CMakeFiles/superlu_dist
-static.dir/dlangs_dist.c.o" "CMakeFiles/superlu_dist-static.dir/d
gsequ_dist.c.o" "CMakeFiles/superlu_dist-static.dir/dlaqgs_dist.c.
o" "CMakeFiles/superlu_dist-static.dir/dutil_dist.c.o" "CMakeFiles
/superlu_dist-static.dir/dmemory_dist.c.o" "CMakeFiles/superlu_dis
t-static.dir/dmyblas2_dist.c.o" "CMakeFiles/superlu_dist-static.di
r/dsp_blas2_dist.c.o" "CMakeFiles/superlu_dist-static.dir/dsp_blas
3_dist.c.o" "CMakeFiles/superlu_dist-static.dir/pdgssvx.c.o" "CMak
eFiles/superlu_dist-static.dir/pdgssvx_ABglobal.c.o" "CMakeFiles/s
uperlu_dist-static.dir/dreadhb.c.o" "CMakeFiles/superlu_dist-stati
c.dir/dreadrb.c.o" "CMakeFiles/superlu_dist-static.dir/dreadtriple
.c.o" "CMakeFiles/superlu_dist-static.dir/dreadtriple_noheader.c.o
" "CMakeFiles/superlu_dist-static.dir/dbinary_io.c.o" "CMakeFiles/
superlu_dist-static.dir/dreadMM.c.o" "CMakeFiles/superlu_dist-stat
ic.dir/pdgsequ.c.o" "CMakeFiles/superlu_dist-static.dir/pdlaqgs.c.
o" "CMakeFiles/superlu_dist-static.dir/dldperm_dist.c.o" "CMakeFil
es/superlu_dist-static.dir/pdlangs.c.o" "CMakeFiles/superlu_dist-s
tatic.dir/pdutil.c.o" "CMakeFiles/superlu_dist-static.dir/pdsymbfa
ct_distdata.c.o" "CMakeFiles/superlu_dist-static.dir/ddistribute.c
.o" "CMakeFiles/superlu_dist-static.dir/pddistribute.c.o" "CMakeFi
les/superlu_dist-static.dir/pdgstrf.c.o" "CMakeFiles/superlu_dist-
static.dir/pdgstrf2.c.o" "CMakeFiles/superlu_dist-static.dir/pdgst
rs.c.o" "CMakeFiles/superlu_dist-static.dir/pdgstrs1.c.o" "CMakeFi
les/superlu_dist-static.dir/pdgstrs_lsum.c.o" "CMakeFiles/superlu_
dist-static.dir/pdgstrs_Bglobal.c.o" "CMakeFiles/superlu_dist-stat
ic.dir/pdgsrfs.c.o" "CMakeFiles/superlu_dist-static.dir/pdgsmv.c.o
" "CMakeFiles/superlu_dist-static.dir/pdgsrfs_ABXglobal.c.o" "CMak
eFiles/superlu_dist-static.dir/pdgsmv_AXglobal.c.o" "CMakeFiles/su
perlu_dist-static.dir/pdGetDiagU.c.o" "CMakeFiles/superlu_dist-sta
tic.dir/dcomplex_dist.c.o" "CMakeFiles/superlu_dist-static.dir/zla
ngs_dist.c.o" "CMakeFiles/superlu_dist-static.dir/zgsequ_dist.c.o"
"CMakeFiles/superlu_dist-static.dir/zlaqgs_dist.c.o" "CMakeFiles/
superlu_dist-static.dir/zutil_dist.c.o" "CMakeFiles/superlu_dist-s
tatic.dir/zmemory_dist.c.o" "CMakeFiles/superlu_dist-static.dir/zm
yblas2_dist.c.o" "CMakeFiles/superlu_dist-static.dir/zsp_blas2_dis
t.c.o" "CMakeFiles/superlu_dist-static.dir/zsp_blas3_dist.c.o" "CM
akeFiles/superlu_dist-static.dir/pzgssvx.c.o" "CMakeFiles/superlu_
dist-static.dir/pzgssvx_ABglobal.c.o" "CMakeFiles/superlu_dist-sta
tic.dir/zreadhb.c.o" "CMakeFiles/superlu_dist-static.dir/zreadrb.c
.o" "CMakeFiles/superlu_dist-static.dir/zreadtriple.c.o" "CMakeFil
es/superlu_dist-static.dir/zreadtriple_noheader.c.o" "CMakeFiles/s
uperlu_dist-static.dir/zbinary_io.c.o" "CMakeFiles/superlu_dist-st
atic.dir/zreadMM.c.o" "CMakeFiles/superlu_dist-static.dir/pzgsequ.
c.o" "CMakeFiles/superlu_dist-static.dir/pzlaqgs.c.o" "CMakeFiles/
superlu_dist-static.dir/zldperm_dist.c.o" "CMakeFiles/superlu_dist
-static.dir/pzlangs.c.o" "CMakeFiles/superlu_dist-static.dir/pzuti
l.c.o" "CMakeFiles/superlu_dist-static.dir/pzsymbfact_distdata.c.o
" "CMakeFiles/superlu_dist-static.dir/zdistribute.c.o" "CMakeFiles
/superlu_dist-static.dir/pzdistribute.c.o" "CMakeFiles/superlu_dis
t-static.dir/pzgstrf.c.o" "CMakeFiles/superlu_dist-static.dir/pzgs
trf2.c.o" "CMakeFiles/superlu_dist-static.dir/pzgstrs.c.o" "CMakeF
iles/superlu_dist-static.dir/pzgstrs1.c.o" "CMakeFiles/superlu_dis
t-static.dir/pzgstrs_lsum.c.o" "CMakeFiles/superlu_dist-static.dir
/pzgstrs_Bglobal.c.o" "CMakeFiles/superlu_dist-static.dir/pzgsrfs.
c.o" "CMakeFiles/superlu_dist-static.dir/pzgsmv.c.o" "CMakeFiles/s
uperlu_dist-static.dir/pzgsrfs_ABXglobal.c.o" "CMakeFiles/superlu_
dist-static.dir/pzgsmv_AXglobal.c.o" "CMakeFiles/superlu_dist-stat
ic.dir/pzGetDiagU.c.o"
1134 /usr/bin/ranlib libsuperlu_dist.a
>> 1135 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0
/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.
so: undefined reference to `_gfortran_concat_string'
>> 1136 collect2: error: ld returned 1 exit status
>> 1137 make[2]: *** [EXAMPLE/CMakeFiles/pddrive.dir/build.make:118: EXAMP
LE/pddrive] Error 1
1138 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-supe
rlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciu
d'
>> 1139 make[1]: *** [CMakeFiles/Makefile2:255: EXAMPLE/CMakeFiles/pddrive
.dir/all] Error 2
1140 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-supe
rlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciu
d'
1141 [ 84%] Built target superlu_dist-static
1142 [ 84%] Linking C executable pddrive3
1143 cd /tmp/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatk
lrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud/EXAMPLE && /spack/opt/s
pack/linux-ubuntu22.04-skylake/gcc-11.2.0/cmake-3.23.2-pmpcgqf26kz
zlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles/pd
drive3.dir/link.txt --verbose=1
1144 [ 84%] Linking C executable pddrive2
1145 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.
4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/li
nux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh
7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-skylake
/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/includ
e -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles
/pddrive3.dir/pddrive3.c.o CMakeFiles/pddrive3.dir/dcreate_matrix.
c.o -o pddrive3 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-supe
rlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciu
d/SRC:/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openbl
as-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsuperlu_d
ist.so.6.1.1 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0
/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.
so -lm -L/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/par
metis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparmetis -L/spa
ck/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77or
xakba5dfqwrw3xh7lbb7q7gz77sg/lib -lmetis
1146 cd /tmp/root/spack-stage/spack-stage-superlu-dist-6.1.1-k7rciudatk
lrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud/EXAMPLE && /spack/opt/s
pack/linux-ubuntu22.04-skylake/gcc-11.2.0/cmake-3.23.2-pmpcgqf26kz
zlogzxqhl47wva5r5pc5m/bin/cmake -E cmake_link_script CMakeFiles/pd
drive2.dir/link.txt --verbose=1
1147 /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openmpi-4.1.
4-cqmipy3bjhsk5dbioidlwxm2oeyqso4b/bin/mpicc -I/spack/opt/spack/li
nux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3xh
7lbb7q7gz77sg/include -I/spack/opt/spack/linux-ubuntu22.04-skylake
/gcc-11.2.0/parmetis-4.0.3-dhmpccfuw3lnjkg5x4iik7s4hi6xynrp/includ
e -DUSE_VENDOR_BLAS -std=c99 -O2 -g -DNDEBUG -rdynamic CMakeFiles
/pddrive2.dir/pddrive2.c.o CMakeFiles/pddrive2.dir/dcreate_matrix.
c.o CMakeFiles/pddrive2.dir/dcreate_matrix_perturbed.c.o -o pddriv
e2 -Wl,-rpath,/tmp/root/spack-stage/spack-stage-superlu-dist-6.1.
1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciud/SRC:/spack/
opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3.20-4ur
mse2d27wawsihuqvsax4jlr5yqgc4/lib ../SRC/libsuperlu_dist.so.6.1.1
/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/openblas-0.3
.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.so -lm -L/spa
ck/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/parmetis-4.0.3-d
hmpccfuw3lnjkg5x4iik7s4hi6xynrp/lib -lparmetis -L/spack/opt/spack/
linux-ubuntu22.04-skylake/gcc-11.2.0/metis-5.1.0-77orxakba5dfqwrw3
xh7lbb7q7gz77sg/lib -lmetis
>> 1148 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0
/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.
so: undefined reference to `_gfortran_concat_string'
>> 1149 collect2: error: ld returned 1 exit status
>> 1150 make[2]: *** [EXAMPLE/CMakeFiles/pddrive1.dir/build.make:118: EXAM
PLE/pddrive1] Error 1
1151 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-supe
rlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciu
d'
>> 1152 make[1]: *** [CMakeFiles/Makefile2:281: EXAMPLE/CMakeFiles/pddrive
1.dir/all] Error 2
>> 1153 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0
/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.
so: undefined reference to `_gfortran_concat_string'
>> 1154 /usr/bin/ld: /spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0
/openblas-0.3.20-4urmse2d27wawsihuqvsax4jlr5yqgc4/lib/libopenblas.
so: undefined reference to `_gfortran_concat_string'
>> 1155 collect2: error: ld returned 1 exit status
>> 1156 make[2]: *** [EXAMPLE/CMakeFiles/pddrive3.dir/build.make:118: EXAM
PLE/pddrive3] Error 1
1157 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-supe
rlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciu
d'
>> 1158 make[1]: *** [CMakeFiles/Makefile2:333: EXAMPLE/CMakeFiles/pddrive
3.dir/all] Error 2
>> 1159 collect2: error: ld returned 1 exit status
>> 1160 make[2]: *** [EXAMPLE/CMakeFiles/pddrive2.dir/build.make:134: EXAM
PLE/pddrive2] Error 1
1161 make[2]: Leaving directory '/tmp/root/spack-stage/spack-stage-supe
rlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciu
d'
>> 1162 make[1]: *** [CMakeFiles/Makefile2:307: EXAMPLE/CMakeFiles/pddrive
2.dir/all] Error 2
1163 make[1]: Leaving directory '/tmp/root/spack-stage/spack-stage-supe
rlu-dist-6.1.1-k7rciudatklrjnl2xlaxa4l3jk4b2jxa/spack-build-k7rciu
d'
>> 1164 make: *** [Makefile:149: all] Error 2
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice cmake --runner spack --replace [email protected] --experiment kokkos --outfile /results/kokkos/3.0.00/cmake/experiment.jsonRequires openmpi, won't work
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi --experiment darshan-runtime --outfile /results/darshan-runtime/3.0.0/openmpi/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice ninja --runner spack --replace ninja --experiment archer --outfile /results/archer/1.0.0/ninja/experiment.json
tac55n53fq77yo72efcr/spack-src/llvm'
1 error found in build log:
242 -- Performing Test CXX_SUPPORTS_FFUNCTION_SECTIONS - Success
243 -- Performing Test C_SUPPORTS_FDATA_SECTIONS
244 -- Performing Test C_SUPPORTS_FDATA_SECTIONS - Success
245 -- Performing Test CXX_SUPPORTS_FDATA_SECTIONS
246 -- Performing Test CXX_SUPPORTS_FDATA_SECTIONS - Success
247 -- Found PythonInterp: /spack/opt/spack/linux-ubuntu22.04-skylake/g
cc-11.2.0/python-3.9.13-a7owmregm4a2ef43uk4x6eyjngeqymej/bin/python
3.9
>> 248 CMake Error at CMakeLists.txt:618 (if):
249 if given arguments:
250
251 "VERSION_LESS" "2.7"
252
253 Unknown arguments specified
254 Won't work, requires openmpi.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi --experiment petsc --outfile /results/petsc/3.10.0/openmpi/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice hwloc --runner spack --replace hwloc --experiment qthreads --outfile /results/qthreads/1.10/hwloc/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice pkgconf --runner spack --replace [email protected] --experiment swig --outfile /results/swig/1.3.40/pkgconf/experiment.jsonWon't work, requires openmpi.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi --experiment pumi --outfile /results/pumi/2.1.0/openmpi/experiment.jsonWon't work, requires openmpi.
docker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice openmpi --runner spack --replace openmpi --experiment sundials --outfile /results/sundials/2.6.2/openmpi/experiment.jsondocker run -v /home/vanessa/Desktop/Code/spliced-experiment/cache:/cache -v /home/vanessa/Desktop/Code/spliced-experiment/spack-opt:/spack/opt -v /home/vanessa/Desktop/Code/spliced-experiment/results:/results -it ghcr.io/buildsi/spliced-experiment:latest spack python /code/scripts/run_spliced.py splice --package [email protected] --splice cmake --runner spack --replace cmake --experiment tasmanian --outfile /results/tasmanian/5.0/cmake/experiment.json
==> [2022-07-29-02:34:00.028614, 12] 12: tasmanian: Executing phase: 'install'
==> [2022-07-29-02:34:00.158737, 12] WRITE LOCK (spack-stage-tasmanian-5.0-mhfh4z733pzipglyd6ylht7g3tj65lra): /tmp/root/spack-stage/.lock[4614188461280527411:1] [Released at 02:34:00.158697]
==> [2022-07-29-02:34:00.185550, 1] Error: OSError: No such file or directory: '/spack/opt/spack/linux-ubuntu22.04-skylake/gcc-11.2.0/tasmanian-5.0-mhfh4z733pzipglyd6ylht7g3tj65lra/share/Tasmanian/testing'
/spack/var/spack/repos/builtin/packages/tasmanian/package.py:180, in setup_smoke_test:
177 tty.msg('Error tasmanian test: CMake 3.10 or higher is required')
178 return
179
>> 180 install_tree(self.prefix.share.Tasmanian.testing,
181 join_path(self.install_test_root, 'testing'))
182 self.cmake_bin(set=True)
See build log for details: