v5.3.15

✨ Enhancements

• Set download button visibility in UI based on user role/group @kalletlak (#10254)

🐛 Bug Fixes

• Fix: Allow ProfiledCasesCounter to add counts to empty alteration count list @BasLee (#10255)

👷‍♀️ Testing, Configuration & Deployment

• Adjust e2e spec after change in number of genes @alisman (cbioportal-frontend#4671)
• Restore skipped annotation-filter-menu specs @BasLee (cbioportal-frontend#4658)

🧰 Maintenance

• Update API docs @dippindots (cbioportal-frontend#4666)

🕵️‍♀️ Full commit logs

• Backend: v5.3.14...v5.3.15
• Frontend: cBioPortal/cbioportal-frontend@v5.3.14...v5.3.15

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v5.3.14

🧬 Features

• Add mutations table and fisher exact two-sided p value to comparison lollipop @gblaih (cbioportal-frontend#4556)

✨ Enhancements

• ✨ Add Time Range Selection to KM Plots on Study View @haynescd (cbioportal-frontend#4645)
• modify documentation for skin.hide_download_controls @h164654156465 (#10258)

🐛 Bug Fixes

• Fix index page with unauthorized studies: only fetch study tags from authorized studies @BasLee (cbioportal-frontend#4653)
• fix 10221 - 403 issue; authentication object is obtained from Security Context. @jagnathan (#10267)

👷‍♀️ Testing, Configuration & Deployment

• Option to disable data download but still allow figure download @h164654156465 (cbioportal-frontend#4662)
• Update seedDB url for localdb test @dippindots (cbioportal-frontend#4665)
• Update screenshots @alisman (cbioportal-frontend#4660)
• Update e2e after data update @alisman (cbioportal-frontend#4659)
• Update download control options @kalletlak (#10264)

🏎 Performance Tweaks

• Improve study-view treatment api's performance @kalletlak (#10261)

⚙️ REST API Changes

• RFC68: Impl. structural variant filtering in Study View filter @pvannierop (#10214)

🧰 Maintenance

• Update Pyyaml package @dippindots (#10283)

🕵️‍♀️ Full commit logs

• Backend: v5.3.13...v5.3.14
• Frontend: cBioPortal/cbioportal-frontend@v5.3.13...v5.3.14

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v5.3.13

✨ Enhancements

• Improve tooltips for Altered and Unaltered group columns on comparison page #9718 @h164654156465 (cbioportal-frontend#4649)

🐛 Bug Fixes

• Fix duplicate SV intragenic records in Mutations tab @fuzhaoyuan (cbioportal-frontend#4650)
• Fix case list selection for multi study queries @alisman (cbioportal-frontend#4648)

👷‍♀️ Testing, Configuration & Deployment

• Fix e2e tests for backend sv_counts_endpoint PR @BasLee (cbioportal-frontend#4647)
• Create property to show reference genome in study list @oplantalech (#10233)

⚙️ REST API Changes

• RFC68: Impl. Struct Var count endpoint for Study View @pvannierop (#10119)

🧰 Maintenance

• Update api clients @alisman (cbioportal-frontend#4651)

🕵️‍♀️ Full commit logs

• Backend: v5.3.12...v5.3.13
• Frontend: cBioPortal/cbioportal-frontend@v5.3.12...v5.3.13

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.12

✨ Enhancements

• Timeline: links if event popover should open in new window when signaled @alisman cBioPortal/cbioportal-frontend#4643

🐛 Bug Fixes

• Fix custom sample list selection @alisman cBioPortal/cbioportal-frontend#4644
• Fix infinite reload of sample lists @alisman cBioPortal/cbioportal-frontend#4641
• Fix duplicate SV intragenic records @fuzhaoyuan cBioPortal/cbioportal-frontend#4642

⚙️ REST API Changes

• Paginated clinical table @BasLee (#10211)

🕵️‍♀️ Full commit logs

• Backend: v5.3.11...v5.3.12
• Frontend: cBioPortal/cbioportal-frontend@v5.3.11...v5.3.12

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/development/release-procedure/#a-note-on-versioning

v5.3.11

✨ Enhancements

• Feature/ch/10184 support patient filters sent via postdata @haynescd (cbioportal-frontend#4635)

📘 Documentation

• add statistical tests in GC in FAQ @jjgao (#10199)
• Update web-API-and-Clients.md @karissawhiting (#10209)
• Adding new features news @dippindots (#10149)
• Add AACR GENIE BPC tutorial videos playlist @ritikakundra (#10215)

🕵️‍♀️ Full commit logs

• Backend: v5.3.10...v5.3.11
• Frontend: cBioPortal/cbioportal-frontend@v5.3.10...v5.3.11

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.10

✨ Enhancements

• Hide reVUE when there is no reVUE mutations in the query @leexgh (cbioportal-frontend#4637)
• Study view KM plot: Updating tooltip and increasing threshold for compact mode @dippindots (cbioportal-frontend#4636)

🐛 Bug Fixes

• Fix add chart button so that it never overlaps tabs @alisman (cbioportal-frontend#4627)

👷‍♀️ Testing, Configuration & Deployment

• Fix localdb @alisman (cbioportal-frontend#4634)

🧰 Maintenance

• Remove redundant makeObservable call @aditygrg2 (cbioportal-frontend#4633)

🕵️‍♀️ Full commit logs

• Backend: v5.3.9...v5.3.10
• Frontend: cBioPortal/cbioportal-frontend@v5.3.9...v5.3.10

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.9

🐛 Bug Fixes

• Fix double click on gene query icon in study view @alisman (cbioportal-frontend#4626)

🎨 Style Tweaks

• Adjust toast settings on studyview @alisman (cbioportal-frontend#4628)

📘 Documentation

• extend File-Formats.md with mutational signature datatype @MatthijsPon (#10172)

🖊️ Data Importer & Validator

• Feature/10133 exclude clinical attributes with low priority @haynescd (#10156)

🧰 Maintenance

• ⚡ Update GenomeNexus Api sync @haynescd (cbioportal-frontend#4618)

🕵️‍♀️ Full commit logs

• Backend: v5.3.8...v5.3.9
• Frontend: cBioPortal/cbioportal-frontend@v5.3.8...v5.3.9

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.8

✨ Enhancements

• Add new "queue" gene icon to study view gene tables @alisman (cbioportal-frontend#4617)
• ✨ Add PatientIdentifiers URL Parameter @haynescd (cbioportal-frontend#4616)
• Add TCGA Pancan pathways to query selector @inodb (cbioportal-frontend#4610)

🐛 Bug Fixes

• Add profile filtering when adding Generic Entity IDs in Oncoprint @oplantalech @alisman (cbioportal-frontend#4596)

👷‍♀️ Testing, Configuration & Deployment

• update screenshots after oncokb change @alisman (cbioportal-frontend#4623)
• Fix integration test @dippindots (#10193)

🧰 Maintenance

• Update svg2pdf to fix broken Overlap charts download @dippindots (cbioportal-frontend#4601)

🕵️‍♀️ Full commit logs

• Backend: v5.3.7...v5.3.8
• Frontend: cBioPortal/cbioportal-frontend@v5.3.7...v5.3.8

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.7

🧬 Features

• Structural variants tab on results view (phase 1) @fuzhaoyuan (cbioportal-frontend#4588)

✨ Enhancements

• 🔧 Add configurability for StudyDownloadUrl @haynescd (cbioportal-frontend#4602)
• Filter Clinical Attribute Charts when priority is -1 @haynescd (cbioportal-frontend#4598)
• Add a configurable legend to timeline tracks @alisman (cbioportal-frontend#4593)

🐛 Bug Fixes

• Correct sample icon coloring on the patient view @gblaih (cbioportal-frontend#4613)
• Fix broken civic links @onursumer (cbioportal-frontend#4612)
• Fix study tag search when no studies available @BasLee (#10164)

👷‍♀️ Testing, Configuration & Deployment

• Disable keycloak caching for localdb tests @dippindots (cbioportal-frontend#4615)

📘 Documentation

• Documentation markdown fixes @justinjao (#10186)
• add jeremy to about page @tmazor (#10166)

🧰 Maintenance

• Add dsnparse Python requirement @pvannierop (#10165)

🕵️‍♀️ Full commit logs

• Backend: v5.3.6...v5.3.7
• Frontend: cBioPortal/cbioportal-frontend@v5.3.6...v5.3.7

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning

v5.3.6

🧬 Features

• Add revue icon for revue variants @leexgh (cbioportal-frontend#4589)

✨ Enhancements

• Download data from study view treatment tables @Player256 (cbioportal-frontend#4595)
• 🔧 Add Configurable Param for max number of samples in study vi… @haynescd (cbioportal-frontend#4587)
• 🔧 Add StudyDownloadUrl to portal.properties @haynescd (#10143)

🐛 Bug Fixes

• Import image as source for revue logo @leexgh (cbioportal-frontend#4606)
• Check undefined revue for mutation type and protein change column @leexgh (cbioportal-frontend#4605)
• Check undefined annotation_summary when fetching revue @leexgh (cbioportal-frontend#4604)

🏎 Performance Tweaks

• Study view km plot optimization @dippindots (cbioportal-frontend#4520)

📘 Documentation

• Add tutorials from others @inodb (#10142)

🎨 Style Tweaks

• Optimize Vue icon image @alisman (cbioportal-frontend#4608)

🕵️‍♀️ Full commit logs

• Backend: v5.3.5...v5.3.6
• Frontend: cBioPortal/cbioportal-frontend@v5.3.5...v5.3.6

🏷Notes on versioning and release procedure

https://docs.cbioportal.org/4.-development/release-procedure#a-note-on-versioning