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cutadapt in image is py2 #6

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keiranmraine opened this issue Sep 10, 2021 · 0 comments

keiranmraine commented Sep 10, 2021

It is not possible to run trim_galore with the -j/cpus option as the cutadapt installation is against python2.

  >>> Now performing quality (cutoff '-q 20') and adapter trimming in a single pass for the adapter sequence: 'AGATCGGAAGAGC' from file test_R1.fastq.gz <<< 
ERROR: Running in parallel is not supported on Python 2

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