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update ChemViz to CDK 2.9 (or better) #18

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egonw opened this issue Jan 2, 2024 · 4 comments
Open
Tracked by #4

update ChemViz to CDK 2.9 (or better) #18

egonw opened this issue Jan 2, 2024 · 4 comments
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@egonw
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egonw commented Jan 2, 2024

cc @scootermorris
@egonw egonw mentioned this issue Jan 2, 2024
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@egonw egonw added the WP2 label Jan 2, 2024
@RvdPloeg
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RvdPloeg commented Nov 12, 2024 •
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chemViz is now using cdk-2.9, see pom https://github.com/RBVI/chemViz2.

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egonw commented Nov 12, 2024

@RvdPloeg, I wonder what Scooter did with this PR... RBVI/chemViz2#8

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egonw commented Dec 1, 2024

Also related: dan2097/jna-inchi#25

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I have taken a look again at chemviz2. Cytoscape accepts the plugin via the App menu but I am a bit clueless how to check the program visualizes structures. I have imported chemicals with smiles as unassigned tables and I have tested example networks with chemicals but I am unable to visualize structures using chemviz2. In the chemiviz2 menu all the options remain gray.

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