bossdb.yaml

Name: BossDB Open Neuroimagery Datasets
Description: This data ecosystem, Brain Observatory Storage Service & Database (BossDB), contains several neuro-imaging datasets across multiple modalities and scales, ranging from nanoscale (electron microscopy), to microscale (cleared lightsheet microscopy and array tomography), and mesoscale (structural and functional magnetic resonance imaging). Additionally, many of the datasets include dense segmentation and meshes.
Contact: brock.wester@jhuapl.edu
Documentation: https://bossdb.org/
ManagedBy: "[Johns Hopkins University Applied Physics Laboratory](https://https://jhuapl.edu)"
UpdateFrequency: New datasets are added as soon as it is available. Minor updates on existing datasets occur sporadically.
Tags:
  - aws-pds
  - life sciences
  - imaging
  - neuroscience
  - neuroimaging
  - electron microscopy
  - x-ray tomography
  - x-ray microtomography
  - x-ray
  - magnetic resonance imaging
  - light-sheet microscopy
  - calcium imaging
  - volumetric imaging
License: Creative Commons 4.0 International (CC BY 4.0)
Resources:
  - Description: Large 3D volumes of neuroimaging data and image processing products such as segmentation and reconstructed meshes
    ARN: arn:aws:s3:::bossdb-open-data
    Region: us-east-1
    Type: S3 Bucket
DataAtWork:
  Tutorials:
    - Title: Data access and download
      URL: https://bossdb.org/get-started
      AuthorName: Jordan Matelsky
      AuthorURL: https://github.com/j6k4m8
  Tools & Applications:
    - Title: bossDB
      URL: https://bossdb.org
      AuthorName: bossDB Team
    - Title: CloudVolume
      URL: https://github.com/seung-lab/cloud-volume
      AuthorName: Seung Lab
  Publications:
    - Title: 'intern: Integrated Toolkit for Extensible and Reproducible Neuroscience'
      URL: https://www.biorxiv.org/content/10.1101/2020.05.15.098707v1
      AuthorName: Jordan K Matelsky, Luis Rodriguez, Daniel Xenes, Timothy Gion, Robert Hider Jr., Brock Wester, William Gray-Roncal 
      AuthorURL: https://bossdb.org/publications
    
    - Title: 'The Block Object Storage Service (bossDB): A Cloud-Native Approach for Petascale Neuroscience Discovery'
      URL: https://doi.org/10.1101/217745v2
      AuthorName: Robert Hider Jr., Dean M. Kleissas, Derek Pryor, Timothy Gion, Luis Rodriguez, Jordan Matelsky, William Gray-Roncal, Brock Wester 
      AuthorURL: https://bossdb.org/publications
    
    - Title: A Community-Developed Open-Source Computational Ecosystem for Big Neuro Data
      URL: https://doi.org/10.1038/s41592-018-0181-1
      AuthorName: J. T. Vogelstein, E. Perlman, B. Falk, A. Baden, W. Gray Roncal, V. Chandrashekhar, F. Collman, S. Seshamani, J. L. Patsolic, K. Lillaney, M. Kazhdan, R. Hider, D. Pryor, J. Matelsky, T. Gion, P. Manavalan, B. Wester, M. Chevillet, E. T. Trautman, K. Khairy, E. Bridgeford, D. M. Kleissas, D. J. Tward, A. K. Crow, B. Hsueh, M. A. Wright, M. I. Miller, S. J. Smith, R. J. Vogelstein, K. Deisseroth, and R. Burns