diff --git a/schema/5.1.0/schema.md b/schema/5.1.0/schema.md index 029f05b18..739ff9eec 100644 --- a/schema/5.1.0/schema.md +++ b/schema/5.1.0/schema.md @@ -450,7 +450,7 @@ Curators MUST annotate the following columns in the `obs` dataframe:
str
categories. If uns['spatial']['is_single']
is True
, all observations MUST be the same value. If unavailable, this MUST be "unknown"
.
+ str
categories. If unavailable, this MUST be "unknown"
.
organism_ontolology_term_id
is "NCBITaxon:9606"
for Homo sapiens, this MUST be the most accurate HsapDv term with the following STRONGLY RECOMMENDED:
Value | -categorical with str categories. If uns['spatial']['is_single'] is True , all observations MUST be the same value. This MUST be a child of NCBITaxon:33208 for Metazoa.
+ | categorical with str categories. This MUST be a child of NCBITaxon:33208 for Metazoa.
|
---|
str
categories. If uns['spatial']['is_single']
is True
, all observations MUST be the same value. If
+ categorical with str
categories. If
organism_ontolology_term_id
is
"NCBITaxon:9606"
for Homo sapiens,
the value MUST be formatted as one or more comma-separated (with no leading or trailing spaces) HANCESTRO
@@ -837,7 +837,7 @@ Curators MUST annotate the following columns in the `obs` dataframe:
str
categories. If uns['spatial']['is_single']
is True
, all observations MUST be the same value. This MUST be a child of PATO:0001894 for phenotypic sex or "unknown"
if unavailable.
+ str
categories. This MUST be a child of PATO:0001894 for phenotypic sex or "unknown"
if unavailable.
uns['spatial']['is_single']
is True
* Added `array_row` for _Visium Spatial Gene Expression_ when uns['spatial']['is_single']
is True
* Updated the requirements for `cell_type_ontology_term_id` for _Visium Spatial Gene Expression_ when uns['spatial']['is_single']
is True
. The value must be `"unknown"` if the corresponding value of `in_tissue` is `0`.
- * Updated the requirements for `development_stage_ontology_term_id`. All observations must be the same value when uns['spatial']['is_single']
is True
.
* Added `in_tissue` for _Visium Spatial Gene Expression_ when uns['spatial']['is_single']
is True
- * Updated the requirements for `organism_ontology_term_id`. All observations must be the same value when uns['spatial']['is_single']
is True
.
- * Updated the requirements for `self_reported_ethnicity_ontology_term_id`. There must be no duplication of terms. All observations must be the same value when uns['spatial']['is_single']
is True
.
- * Updated the requirements for `sex_ontology_term_id`. All observations must be the same value when uns['spatial']['is_single']
is True
.
+ * Updated the requirements for `self_reported_ethnicity_ontology_term_id`. There must be no duplication of terms.
* obsm (Embeddings)
* Added `spatial` for _Visium Spatial Gene Expression_ and _Slide-seqV2_
* Updated requirements for `X_{suffix}`. {suffix} MUST NOT be `"spatial"`.