diff --git a/schema/5.1.0/schema.md b/schema/5.1.0/schema.md index 029f05b18..739ff9eec 100644 --- a/schema/5.1.0/schema.md +++ b/schema/5.1.0/schema.md @@ -450,7 +450,7 @@ Curators MUST annotate the following columns in the `obs` dataframe: Value - categorical with str categories. If uns['spatial']['is_single'] is True, all observations MUST be the same value. If unavailable, this MUST be "unknown". + categorical with str categories. If unavailable, this MUST be "unknown".

If organism_ontolology_term_id is "NCBITaxon:9606" for Homo sapiens, this MUST be the most accurate HsapDv term with the following STRONGLY RECOMMENDED:

@@ -602,7 +602,7 @@ Curators MUST annotate the following columns in the `obs` dataframe: -
Valuecategorical with str categories. If uns['spatial']['is_single'] is True, all observations MUST be the same value. This MUST be a child of NCBITaxon:33208 for Metazoa. + categorical with str categories. This MUST be a child of NCBITaxon:33208 for Metazoa.
@@ -623,7 +623,7 @@ Curators MUST annotate the following columns in the `obs` dataframe: Value - categorical with str categories. If uns['spatial']['is_single'] is True, all observations MUST be the same value. If + categorical with str categories. If organism_ontolology_term_id is "NCBITaxon:9606" for Homo sapiens, the value MUST be formatted as one or more comma-separated (with no leading or trailing spaces) HANCESTRO @@ -837,7 +837,7 @@ Curators MUST annotate the following columns in the `obs` dataframe: Value - categorical with str categories. If uns['spatial']['is_single'] is True, all observations MUST be the same value. This MUST be a child of PATO:0001894 for phenotypic sex or "unknown" if unavailable. + categorical with str categories. This MUST be a child of PATO:0001894 for phenotypic sex or "unknown" if unavailable. @@ -1860,11 +1860,8 @@ When a dataset is uploaded, CELLxGENE Discover MUST automatically add the `schem * Added `array_col` for _Visium Spatial Gene Expression_ when uns['spatial']['is_single'] is True * Added `array_row` for _Visium Spatial Gene Expression_ when uns['spatial']['is_single'] is True * Updated the requirements for `cell_type_ontology_term_id` for _Visium Spatial Gene Expression_ when uns['spatial']['is_single'] is True. The value must be `"unknown"` if the corresponding value of `in_tissue` is `0`. - * Updated the requirements for `development_stage_ontology_term_id`. All observations must be the same value when uns['spatial']['is_single'] is True. * Added `in_tissue` for _Visium Spatial Gene Expression_ when uns['spatial']['is_single'] is True - * Updated the requirements for `organism_ontology_term_id`. All observations must be the same value when uns['spatial']['is_single'] is True. - * Updated the requirements for `self_reported_ethnicity_ontology_term_id`. There must be no duplication of terms. All observations must be the same value when uns['spatial']['is_single'] is True. - * Updated the requirements for `sex_ontology_term_id`. All observations must be the same value when uns['spatial']['is_single'] is True. + * Updated the requirements for `self_reported_ethnicity_ontology_term_id`. There must be no duplication of terms. * obsm (Embeddings) * Added `spatial` for _Visium Spatial Gene Expression_ and _Slide-seqV2_ * Updated requirements for `X_{suffix}`. {suffix} MUST NOT be `"spatial"`.