Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Problem creating bigger dendrograms / crash #159

Open
nici7 opened this issue Jun 27, 2023 · 1 comment
Open

Problem creating bigger dendrograms / crash #159

nici7 opened this issue Jun 27, 2023 · 1 comment

Comments

@nici7
Copy link

nici7 commented Jun 27, 2023

Hi,
I am trying to create a dendrogram in the Protein Analysis for a strain collection (no replicates, except for the calibration spots). The software gets stuck when I select several samples (the screen turns grey). With 6 samples it usually works fine, and I've already managed once to create a dendrogram for about 40 samples by adding samples stepwise, but often it fails with 20 or less samples already. I could not figure out a maximum number of samples to select, as it seems quite random when the software crashes.
Using the mirror plots, I've chosen the following peak picking settings: Percent Presence: 0, Signal to Noise: 20, Lower mass cutoff: 2000, Upper mass cutoff:15000, ppm tolerance: 1000

Is there any way to create a dendrogram of 50-93 samples?

Thank you!

@nici7
Copy link
Author

nici7 commented Jun 27, 2023

I'm using the version 1.1.10

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant